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Worm Phenotype (WP): accumulated cell corpses

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <4>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + + 5:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ + + + + 5:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ + + + 4:   cell death variant [WBPhenotype:0000729] <3>(56|50) (57|16|5)
+ + + 3:   programmed cell death variant [WBPhenotype:0001172] <3>(54|47) (55|15|5)
+ + 2:   apoptosis variant [WBPhenotype:0000730] <13>(50|43) (50|12|5)
+ 1:   cell corpse number variant [WBPhenotype:0000590] <2>(29|29) (30|10|5)
0:   accumulated cell corpses [WBPhenotype:0000241] <2>(24|25) (25|10|5)
- 1:   accumulated germline cell corpses [WBPhenotype:0001180](15|18) (16|9|4)
- 1:   accumulated somatic cell corpses [WBPhenotype:0001181](2|2) (2|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
DLC0Direct
PX domain0Direct
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.0000000001451Direct
Cullin repeat-like0.000000004828Direct
ENTH/VHS domain0.0000003795Direct
GroEL apical domain-like0.0000007728Direct
SH3-domain0.00000154Direct
Histone-fold0.000002835Direct
Clathrin adaptor appendage domain0.000003802Direct
Integrin domains0.000003802Direct
Activating enzymes of the ubiquitin-like proteins0.00000629Direct
Metal cation-transporting ATPase, ATP-binding domain N0.000009849Direct
GroEL equatorial domain-like0.00001351Direct
GroEL-intermediate domain like0.00001351Direct
Calcium ATPase, transmembrane domain M0.00001392Direct
Tubby C-terminal domain-like0.00001784Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00005063Direct
Sec1/munc18-like (SM) proteins0.00005063Direct
Calcium ATPase, transduction domain A0.00009577Direct
POZ domain0.0001014Direct
"Winged helix" DNA-binding domain0.4815Inherited
ARM repeat0.5225Inherited
BAR/IMD domain-like0.6828Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
PX domain0Direct
Arginine methyltransferase0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Integrin domains0Direct
Skp1 dimerisation domain-like0Direct
Cullin repeat0Direct
SCF ubiquitin ligase complex WHB domain0Direct
DLC0Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain0Direct
Cullin homology domain0.0000000004654Direct
BTB/POZ domain0.000000009678Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000008268Direct
RecA protein-like (ATPase-domain)0.000001562Direct
Nucleosome core histones0.000003389Direct
SH3-domain0.00001016Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00001309Direct
Ubiquitin activating enzymes (UBA)0.00003061Direct
BAR domain0.00003061Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0000865Direct
Sec1/munc18-like (SM) proteins0.0000865Direct
Clathrin adaptor core protein0.0001908Direct
Calcium ATPase, transduction domain A0.0002297Direct
Phosphotyrosine-binding domain (PTB)0.0002355Direct
Armadillo repeat0.002088Inherited
Phoshoinositide 3-kinase (PI3K), catalytic domain1Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PX domain0Direct
Skp1 dimerisation domain-like0Direct
DLC0Direct
Cullin homology domain0.0000000001157Direct
Cullin repeat-like0.000000003872Direct
ENTH/VHS domain0.0000003074Direct
GroEL apical domain-like0.0000006285Direct
SH3-domain0.000001256Direct
Histone-fold0.000002316Direct
Clathrin adaptor appendage domain0.000003109Direct
Integrin domains0.000003109Direct
Activating enzymes of the ubiquitin-like proteins0.000005143Direct
Metal cation-transporting ATPase, ATP-binding domain N0.000008061Direct
GroEL-intermediate domain like0.00001107Direct
GroEL equatorial domain-like0.00001107Direct
Calcium ATPase, transmembrane domain M0.0000114Direct
Tubby C-terminal domain-like0.00001463Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00004171Direct
Sec1/munc18-like (SM) proteins0.00004171Direct
Calcium ATPase, transduction domain A0.00007901Direct
POZ domain0.00008376Direct
SNARE-like0.001942Inherited
"Winged helix" DNA-binding domain0.4597Inherited
ARM repeat0.5004Inherited
BAR/IMD domain-like0.6617Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.000008061Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00001107Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00001107Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.00001463Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00008127Direct
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.001942Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.000005578Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00001107Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.0007266Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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