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Worm Phenotype (WP): pleiotropic defects severe early emb

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + 8:   Variant [WBPhenotype:0000886] <2>
+ + + + + + + 7:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + + + 6:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + + + 5:   organism development variant [WBPhenotype:0000531] <10>(505|583) (505|248|68)
+ + + + 4:   embryonic development variant [WBPhenotype:0000749] <21>(437|529) (437|228|63)
+ + + + 4:   lethal [WBPhenotype:0000062] <5>(497|580) (497|247|68)
+ + + 3:   embryonic lethal [WBPhenotype:0000050] <7>(433|528) (433|227|63)
+ + 2:   early embryonic lethal [WBPhenotype:0001100] <24>(40|39) (40|12|3)
+ 1:   other abnormality early emb [WBPhenotype:0001007] <2>(11|6) (11|2|1)
0:   pleiotropic defects severe early emb [WBPhenotype:0000270](11|6) (11|2|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Zn-binding ribosomal proteins0.00000000000003527Direct
Translation proteins SH3-like domain0.0000000000001646Direct
GroEL-intermediate domain like0.000000000001234Direct
GroEL equatorial domain-like0.000000000001234Direct
GroEL apical domain-like0.000000000004058Direct
Class II aaRS and biotin synthetases0.00000000003834Direct
Nucleotidylyl transferase0.0000000185Direct
Nucleic acid-binding proteins0.00000002988Direct
S15/NS1 RNA-binding domain0.0000001692Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000009834Direct
Translation proteins0.00001381Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), ATPase domain0.00000000000115Direct
Group II chaperonin (CCT, TRIC), apical domain0.000000000005098Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.00000000007122Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.000000003979Direct
Cold shock DNA-binding domain-like0.0000000286Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00001247Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Zn-binding ribosomal proteins0.00000000000002768Direct
Translation proteins SH3-like domain0.0000000000001294Direct
GroEL equatorial domain-like0.0000000000009719Direct
GroEL-intermediate domain like0.0000000000009719Direct
GroEL apical domain-like0.000000000003201Direct
Class II aaRS and biotin synthetases0.0000000000303Direct
Nucleotidylyl transferase0.00000001476Direct
Nucleic acid-binding proteins0.00000002388Direct
S15/NS1 RNA-binding domain0.0000001358Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000007999Direct
Translation proteins0.00001125Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000000000009719Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000000000009719Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000000000009719Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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