SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): no differentiated gametes

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ + + 3:   cell development variant [WBPhenotype:0000529] <17>(128|124) (129|49|15)
+ + 2:   gametogenesis variant [WBPhenotype:0000774] <2>(65|59) (66|27|6)
+ 1:   germ cell differentiation variant [WBPhenotype:0000894] <3>(36|39) (36|15|2)
0:   no differentiated gametes [WBPhenotype:0000395] <2>(7|9) (7|3|1)
- 1:   no oocytes [WBPhenotype:0000291](7|9) (7|3|1)
- 1:   sperm absent [WBPhenotype:0000290](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Smc hinge domain0.0000196Direct
Nucleic acid-binding proteins0.008722Inherited
"Winged helix" DNA-binding domain0.08201Inherited
Sm-like ribonucleoproteins0.2414Inherited
GroEL equatorial domain-like0.3501Inherited
GroEL-intermediate domain like0.3501Inherited
GroEL apical domain-like0.3501Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DNA replication initiator (cdc21/cdc54) N-terminal domain0.0000004398Direct
Smc hinge domain0.00001118Direct
Ubiquitin-related0.007179Inherited
Cyclin0.01734Inherited
Cold shock DNA-binding domain-like0.0304Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.06348Inherited
Pumilio repeat0.2475Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.5053Inherited
Group II chaperonin (CCT, TRIC), apical domain0.5053Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Smc hinge domain0.00001608Direct
Nucleic acid-binding proteins0.007495Inherited
"Winged helix" DNA-binding domain0.07368Inherited
Sm-like ribonucleoproteins0.2238Inherited
GroEL-intermediate domain like0.3299Inherited
GroEL equatorial domain-like0.3299Inherited
GroEL apical domain-like0.3299Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.03915Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.3299Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.3299Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.3299Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)