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Worm Phenotype (WP): somatic gonad development variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + 3:   organ system development variant [WBPhenotype:0000530] <10>(79|72) (80|33|13)
+ + 2:   reproductive system development variant [WBPhenotype:0000624] <10>(48|41) (49|22|9)
+ 1:   gonad development variant [WBPhenotype:0000691] <2>(20|17) (21|9|5)
0:   somatic gonad development variant [WBPhenotype:0000399] <12>(15|13) (16|6|1)
- 1:   distal tip cell development variant [WBPhenotype:0001656] <2>(2|2) (2|0|0)
- 1:   spermatheca development variant [WBPhenotype:0001662] <1>(0|0) (0|0|0)
- 1:   extra gonad arms [WBPhenotype:0001928](0|0) (0|0|0)
- 1:   extra gonadal sheath cells [WBPhenotype:0001992](0|0) (0|0|0)
- 1:   fewer gonadal sheath cells [WBPhenotype:0001993](0|0) (0|0|0)
- 1:   male somatic gonad development variant [WBPhenotype:0002188](6|5) (6|3|1)
- 1:   missing gonad arms [WBPhenotype:0002207](0|0) (0|0|0)
- 1:   no anchor cell [WBPhenotype:0002136](0|0) (0|0|0)
- 1:   non reflexed gonad arms [WBPhenotype:0000396](0|0) (0|0|0)
- 1:   oocyte septum formation variant [WBPhenotype:0001810](5|6) (5|2|0)
- 1:   somatic gonad precursor symmetrical sisters [WBPhenotype:0001968](0|0) (0|0|0)
- 1:   somatic gonad primordium development defective [WBPhenotype:0000400](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0.00001373Direct
GroEL equatorial domain-like0.00001373Direct
F1F0 ATP synthase subunit C0.00001808Direct
GroEL apical domain-like0.00002624Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00007901Direct
TPR-like0.0001013Direct
Acyl-CoA N-acyltransferases (Nat)0.0004352Direct
Cyclin-like0.0006953Direct
SNARE-like0.002326Inherited
Tubulin nucleotide-binding domain-like0.003884Inherited
Tubulin C-terminal domain-like0.004859Inherited
Nucleic acid-binding proteins0.237Inherited
Bromodomain0.9166Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Proteasome subunits0.00000105Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.000001443Direct
N-acetyl transferase, NAT0.000005209Direct
F1F0 ATP synthase subunit C0.0000287Direct
RecA protein-like (ATPase-domain)0.00008121Direct
Clathrin adaptor core protein0.0001792Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0003393Direct
Group II chaperonin (CCT, TRIC), apical domain0.0005802Direct
Tubulin, GTPase domain0.00602Inherited
Tubulin, C-terminal domain0.007525Inherited
Bromodomain0.9061Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL equatorial domain-like0.00001118Direct
GroEL-intermediate domain like0.00001118Direct
F1F0 ATP synthase subunit C0.00001475Direct
GroEL apical domain-like0.00002142Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00006466Direct
TPR-like0.000083Direct
Acyl-CoA N-acyltransferases (Nat)0.0003595Direct
Cyclin-like0.0005768Direct
Chromo domain-like0.0008844Direct
SNARE-like0.001956Inherited
Tubulin nucleotide-binding domain-like0.00329Inherited
Tubulin C-terminal domain-like0.004127Inherited
Nucleic acid-binding proteins0.2196Inherited
Bromodomain0.9017Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000003137Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00001118Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00001118Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.00001602Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.00329Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00001118Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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