SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): necrotic cell death variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + 4:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ + + + 4:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ + + 3:   cell death variant [WBPhenotype:0000729] <3>(56|50) (57|16|5)
+ + 2:   programmed cell death variant [WBPhenotype:0001172] <3>(54|47) (55|15|5)
+ 1:   non apoptotic cell death variant [WBPhenotype:0001173] <2>(12|10) (12|4|1)
0:   necrotic cell death variant [WBPhenotype:0000415] <1>(11|8) (11|3|1)
- 1:   necrotic cell death increased [WBPhenotype:0001397] <2>(10|8) (10|3|1)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.000000000003826Direct
Cullin repeat-like0.0000000001313Direct
Activating enzymes of the ubiquitin-like proteins0.0000005051Direct
POZ domain0.0000006191Direct
SET domain0.000001237Direct
"Winged helix" DNA-binding domain0.00001081Direct
Sm-like ribonucleoproteins0.0009628Direct
Chromo domain-like0.001443Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.007683Inherited
ARM repeat0.3977Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Arginine methyltransferase0Direct
Skp1 dimerisation domain-like0Direct
Cullin repeat0Direct
SCF ubiquitin ligase complex WHB domain0Direct
Cullin homology domain0.00000000000661Direct
BTB/POZ domain0.00000000001982Direct
Ubiquitin activating enzymes (UBA)0.000002844Direct
Histone lysine methyltransferases0.000004061Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.00000000000304Direct
Cullin repeat-like0.0000000001048Direct
Activating enzymes of the ubiquitin-like proteins0.0000004097Direct
POZ domain0.0000005028Direct
SET domain0.000001008Direct
"Winged helix" DNA-binding domain0.000008853Direct
Sm-like ribonucleoproteins0.0008067Direct
Chromo domain-like0.001212Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.006588Inherited
ARM repeat0.3767Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)