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Worm Phenotype (WP): antibody staining variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(178|190) (182|87|26)
+ + 2:   gene expression variant [WBPhenotype:0000717] <11>(127|139) (131|64|20)
+ 1:   protein expression variant [WBPhenotype:0000112] <6>(39|44) (41|19|6)
0:   antibody staining variant [WBPhenotype:0000424] <6>(5|5) (5|2|1)
- 1:   antibody staining increased [WBPhenotype:0000426](0|0) (0|0|0)
- 1:   antibody staining reduced [WBPhenotype:0000425](0|0) (0|0|0)
- 1:   antibody subcellular localization variant [WBPhenotype:0001403](0|0) (0|0|0)
- 1:   antibody temporal expression variant [WBPhenotype:0002208](0|0) (0|0|0)
- 1:   ectopic expression antibody [WBPhenotype:0001404](1|1) (1|0|0)
- 1:   pattern antibody staining variant [WBPhenotype:0002216](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Intermediate filament protein, coiled coil region0.000000000006287Direct
Lamin A/C globular tail domain0.0000000006806Direct
Frizzled cysteine-rich domain0.000001749Direct
Spectrin repeat0.000002647Direct
SET domain0.2532Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Intermediate filament protein, coiled coil region0.00000000001792Direct
Lamin A/C globular tail domain0.00000001961Direct
Spectrin repeat0.000002532Direct
Frizzled cysteine-rich domain0.000002541Direct
Histone lysine methyltransferases0.03917Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Intermediate filament protein, coiled coil region0.000000000004961Direct
Lamin A/C globular tail domain0.0000000005402Direct
Frizzled cysteine-rich domain0.000001416Direct
Spectrin repeat0.000002146Direct
SET domain0.2353Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.0000000006743Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.000009274Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.000004108Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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