SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): paraquat response variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + 4:   organism physiology variant [WBPhenotype:0000576] <10>(355|415) (355|191|56)
+ + + + 4:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ + + + 4:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ + + 3:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(346|406) (348|189|55)
+ + + 3:   cell homeostasis metabolism variant [WBPhenotype:0000585] <12>(65|61) (65|26|11)
+ + 2:   cell stress response variant [WBPhenotype:0000142] <12>(28|24) (28|9|3)
+ + 2:   organism environmental stimulus response variant [WBPhenotype:0000738] <16>(115|103) (118|51|16)
+ + 2:   organism stress response variant [WBPhenotype:0000067] <17>(30|26) (30|8|2)
+ 1:   organism oxidative stress response variant [WBPhenotype:0001620] <3>(7|8) (7|2|0)
+ 1:   oxidative stress response variant [WBPhenotype:0000068] <3>(7|7) (7|2|0)
+ 1:   pesticide response variant [WBPhenotype:0000459] <3>(11|10) (11|5|0)
0:   paraquat response variant [WBPhenotype:0000460] <2>(7|7) (7|2|0)
- 1:   paraquat hypersensitive [WBPhenotype:0000462](4|1) (4|0|0)
- 1:   paraquat resistant [WBPhenotype:0000461](1|1) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0.000002126Direct
Thioredoxin-like0.000007298Direct
Lipocalins0.001351Inherited
Nucleotidylyl transferase0.001351Inherited
E set domains0.01712Inherited
Cysteine proteinases0.02239Inherited
"Winged helix" DNA-binding domain0.7704Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0.000003226Direct
FAD/NAD-linked reductases, N-terminal and central domains0.000006598Direct
Erythroid transcription factor GATA-10.00002497Direct
Glutathione S-transferase (GST), N-terminal domain0.00006283Direct
Fatty acid binding protein-like0.00009104Direct
Glutathione peroxidase-like0.0001135Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.0004909Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0.000001735Direct
Thioredoxin-like0.00000597Direct
Nucleotidylyl transferase0.001133Inherited
Lipocalins0.001133Inherited
E set domains0.01485Inherited
Cysteine proteinases0.01954Inherited
"Winged helix" DNA-binding domain0.7508Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51905,55424
  • 51905 - FAD/NAD(P)-binding domain
  • 55424 - FAD/NAD-linked reductases, dimerisation (C-terminal) domain
  • 0.000001735Direct
    52833,47616
  • 52833 - Thioredoxin-like
  • 47616 - GST C-terminal domain-like
  • 0.0006893Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)