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Worm Phenotype (WP): oxygen response variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + 3:   organism physiology variant [WBPhenotype:0000576] <10>(355|415) (355|191|56)
+ + 2:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(346|406) (348|189|55)
+ 1:   organism environmental stimulus response variant [WBPhenotype:0000738] <16>(115|103) (118|51|16)
0:   oxygen response variant [WBPhenotype:0000464] <4>(10|7) (10|3|0)
- 1:   anoxia response variant [WBPhenotype:0002424] <3>(1|1) (1|0|0)
- 1:   hypoxia response variant [WBPhenotype:0002423] <3>(9|6) (9|3|0)
- 1:   high oxygen hypersensitive [WBPhenotype:0000466](0|0) (0|0|0)
- 1:   high oxygen resistant [WBPhenotype:0000465](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Class II aaRS and biotin synthetases0Direct
Nucleotidylyl transferase0.0000000000003078Direct
Class II aaRS ABD-related0.000000002253Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000000006694Direct
ValRS/IleRS/LeuRS editing domain0.00001141Direct
PYP-like sensor domain (PAS domain)0.0001317Direct
Quinoprotein alcohol dehydrogenase-like0.001534Inherited
Protein kinase-like (PK-like)0.003892Inherited
HLH, helix-loop-helix DNA-binding domain0.008916Inherited
Nucleic acid-binding proteins0.1137Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0Direct
Anticodon-binding domain of Class II aaRS0Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.00000000000001753Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000000004907Direct
ValRS/IleRS/LeuRS editing domain0.000008551Direct
Protein kinases, catalytic subunit0.0006499Direct
HLH, helix-loop-helix DNA-binding domain0.007268Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Class II aaRS and biotin synthetases0Direct
Nucleotidylyl transferase0.0000000000002437Direct
Class II aaRS ABD-related0.000000001804Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000000005372Direct
ValRS/IleRS/LeuRS editing domain0.000009344Direct
PYP-like sensor domain (PAS domain)0.0001088Direct
Quinoprotein alcohol dehydrogenase-like0.001289Inherited
Protein kinase-like (PK-like)0.003306Inherited
HLH, helix-loop-helix DNA-binding domain0.007663Inherited
Nucleic acid-binding proteins0.103Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.00000007892Direct
    50677,52374
  • 50677 - ValRS/IleRS/LeuRS editing domain
  • 52374 - Nucleotidylyl transferase
  • 0.000009344Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)