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Worm Phenotype (WP): pigmentation variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ 1:   body morphology variant [WBPhenotype:0000072] <17>(67|65) (70|23|11)
+ 1:   adult body morphology variant [WBPhenotype:0000036] <17>(67|65) (70|22|11)
+ 1:   developmental morphology variant [WBPhenotype:0000934] <17>(67|65) (70|22|11)
+ 1:   organism segment morphology variant [WBPhenotype:0000582] <17>(67|65) (70|22|11)
+ 1:   organism morphology variant [WBPhenotype:0000535] <17>(334|430) (336|186|52)
+ 1:   body region morphology variant [WBPhenotype:0000532] <17>(67|65) (70|22|11)
0:   pigmentation variant [WBPhenotype:0000521] <4>(12|5) (13|3|1)
- 1:   organism pigmentation variant [WBPhenotype:0000527] <4>(11|5) (12|3|1)
- 1:   body region pigmentation variant [WBPhenotype:0000278] <2>(0|0) (0|0|0)
- 1:   organ system pigmentation variant [WBPhenotype:0000292] <1>(0|0) (0|0|0)
- 1:   cell pigmentation variant [WBPhenotype:0000526](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL equatorial domain-like0.0000004219Direct
GroEL-intermediate domain like0.0000004219Direct
GroEL apical domain-like0.000001007Direct
ARM repeat0.000045Direct
Cyclin-like0.0001027Direct
PreATP-grasp domain0.0005389Direct
Sm-like ribonucleoproteins0.0007668Direct
Glutathione synthetase ATP-binding domain-like0.002064Inherited
SNARE-like0.002704Inherited
Lipocalins0.004528Inherited
ClpP/crotonase0.006887Inherited
"Winged helix" DNA-binding domain0.01449Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), ATPase domain0.0000002603Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000007435Direct
Cyclin0.000008049Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0002166Direct
Fatty acid binding protein-like0.00245Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL-intermediate domain like0.0000003419Direct
GroEL equatorial domain-like0.0000003419Direct
GroEL apical domain-like0.0000008195Direct
ARM repeat0.00003706Direct
Cyclin-like0.00008483Direct
PreATP-grasp domain0.0004485Direct
Sm-like ribonucleoproteins0.0006414Direct
Translation proteins SH3-like domain0.00123Inherited
Glutathione synthetase ATP-binding domain-like0.001741Inherited
SNARE-like0.002286Inherited
Lipocalins0.00385Inherited
ClpP/crotonase0.005891Inherited
"Winged helix" DNA-binding domain0.01253Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000003419Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000003419Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0000004182Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000003419Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)