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Worm Phenotype (WP): organism pigmentation variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <2>
+ + 2:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ 1:   pigmentation variant [WBPhenotype:0000521] <4>(15|7) (15|5|2)
0:   organism pigmentation variant [WBPhenotype:0000527] <5>(14|7) (14|5|2)
- 1:   developmental pigmentation variant [WBPhenotype:0001009] <5>(3|1) (3|0|0)
- 1:   pale [WBPhenotype:0001261] <5>(0|0) (0|0|0)
- 1:   clear [WBPhenotype:0001010] <2>(6|1) (6|2|1)
- 1:   male pigmentation variant [WBPhenotype:0000963](0|0) (0|0|0)
- 1:   patchy coloration [WBPhenotype:0001029](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL-intermediate domain like0.0000003672Direct
GroEL equatorial domain-like0.0000003672Direct
GroEL apical domain-like0.0000008777Direct
Cyclin-like0.000008383Direct
PreATP-grasp domain0.0003961Direct
Sm-like ribonucleoproteins0.0006898Direct
Glutathione synthetase ATP-binding domain-like0.001798Inherited
Cysteine proteinases0.002373Inherited
SNARE-like0.002482Inherited
Lipocalins0.003829Inherited
ClpP/crotonase0.00637Inherited
DBL homology domain (DH-domain)0.00637Inherited
"Winged helix" DNA-binding domain0.01261Inherited
EGF/Laminin0.8186Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), ATPase domain0.0000002261Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000006473Direct
Cyclin0.000006892Direct
Adenain-like0.00002594Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0001939Direct
Fatty acid binding protein-like0.001793Inherited
DBL homology domain (DH-domain)0.008486Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL equatorial domain-like0.0000002956Direct
GroEL-intermediate domain like0.0000002956Direct
GroEL apical domain-like0.0000007088Direct
Cyclin-like0.000006816Direct
PreATP-grasp domain0.0003268Direct
Sm-like ribonucleoproteins0.0005722Direct
Glutathione synthetase ATP-binding domain-like0.001505Inherited
Cysteine proteinases0.001997Inherited
SNARE-like0.002089Inherited
Lipocalins0.003243Inherited
DBL homology domain (DH-domain)0.005429Inherited
ClpP/crotonase0.005429Inherited
"Winged helix" DNA-binding domain0.01088Inherited
EGF/Laminin0.8007Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000002956Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000002956Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0000003537Direct
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.001553Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.8753Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000002956Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.002741Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)