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Worm Phenotype (WP): organism pigmentation variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + 2:   organism morphology variant [WBPhenotype:0000535] <17>(334|430) (336|186|52)
+ + 2:   adult body morphology variant [WBPhenotype:0000036] <17>(67|65) (70|22|11)
+ + 2:   body morphology variant [WBPhenotype:0000072] <17>(67|65) (70|23|11)
+ + 2:   body region morphology variant [WBPhenotype:0000532] <17>(67|65) (70|22|11)
+ + 2:   organism segment morphology variant [WBPhenotype:0000582] <17>(67|65) (70|22|11)
+ + 2:   developmental morphology variant [WBPhenotype:0000934] <17>(67|65) (70|22|11)
+ 1:   pigmentation variant [WBPhenotype:0000521] <4>(12|5) (13|3|1)
0:   organism pigmentation variant [WBPhenotype:0000527] <4>(11|5) (12|3|1)
- 1:   developmental pigmentation variant [WBPhenotype:0001009] <6>(2|1) (2|0|0)
- 1:   pale [WBPhenotype:0001261] <5>(0|0) (0|0|0)
- 1:   clear [WBPhenotype:0001010] <2>(4|0) (4|0|0)
- 1:   patchy coloration [WBPhenotype:0001029](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL equatorial domain-like0.0000003002Direct
GroEL-intermediate domain like0.0000003002Direct
GroEL apical domain-like0.0000007184Direct
Cyclin-like0.00007168Direct
PreATP-grasp domain0.0003489Direct
Sm-like ribonucleoproteins0.0005935Direct
Glutathione synthetase ATP-binding domain-like0.00155Inherited
SNARE-like0.0022Inherited
Lipocalins0.003322Inherited
ClpP/crotonase0.005652Inherited
"Winged helix" DNA-binding domain0.0103Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), ATPase domain0.0000001819Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000005222Direct
Cyclin0.000005417Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0001637Direct
Fatty acid binding protein-like0.001573Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL-intermediate domain like0.0000002431Direct
GroEL equatorial domain-like0.0000002431Direct
GroEL apical domain-like0.0000005842Direct
Cyclin-like0.00005908Direct
PreATP-grasp domain0.0002894Direct
Sm-like ribonucleoproteins0.0004944Direct
Translation proteins SH3-like domain0.0009966Direct
Glutathione synthetase ATP-binding domain-like0.001303Inherited
SNARE-like0.001858Inherited
Lipocalins0.002817Inherited
ClpP/crotonase0.004819Inherited
"Winged helix" DNA-binding domain0.008873Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000002431Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000002431Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0000002825Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000002431Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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