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Worm Phenotype (WP): cell corpse number variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + 4:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ + + + 4:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ + + 3:   cell death variant [WBPhenotype:0000729] <3>(56|50) (57|16|5)
+ + 2:   programmed cell death variant [WBPhenotype:0001172] <3>(54|47) (55|15|5)
+ 1:   apoptosis variant [WBPhenotype:0000730] <13>(50|43) (50|12|5)
0:   cell corpse number variant [WBPhenotype:0000590] <2>(29|29) (30|10|5)
- 1:   accumulated cell corpses [WBPhenotype:0000241] <2>(24|25) (25|10|5)
- 1:   cell corpse number decreased [WBPhenotype:0002045](4|2) (4|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
DLC0Direct
PX domain0Direct
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.0000000002705Direct
Cullin repeat-like0.000000008937Direct
Integrin domains0.0000054Direct
Activating enzymes of the ubiquitin-like proteins0.000009668Direct
Metal cation-transporting ATPase, ATP-binding domain N0.00001748Direct
Calcium ATPase, transmembrane domain M0.00002467Direct
Tubby C-terminal domain-like0.00002527Direct
Cupredoxins0.00002527Direct
Lamin A/C globular tail domain0.000069Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00007137Direct
Sec1/munc18-like (SM) proteins0.00007137Direct
Calcium ATPase, transduction domain A0.0001554Direct
POZ domain0.00029Direct
Hect, E3 ligase catalytic domain0.0005086Direct
Intermediate filament protein, coiled coil region0.0012Inherited
BAR/IMD domain-like0.009807Inherited
SH3-domain0.01568Inherited
ENTH/VHS domain0.01839Inherited
Protein kinase-like (PK-like)0.05813Inherited
Histone-fold0.06598Inherited
ARM repeat0.1068Inherited
Clathrin adaptor appendage domain0.1174Inherited
GroEL apical domain-like0.118Inherited
"Winged helix" DNA-binding domain0.1534Inherited
GroEL equatorial domain-like0.191Inherited
GroEL-intermediate domain like0.191Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
PX domain0Direct
Arginine methyltransferase0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Integrin domains0Direct
Skp1 dimerisation domain-like0Direct
Cullin repeat0Direct
SCF ubiquitin ligase complex WHB domain0Direct
DLC0Direct
Myotubularin-like phosphatases0Direct
Cullin homology domain0.0000000009339Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0.000001475Direct
Ephrin ectodomain0.000009665Direct
Ubiquitin activating enzymes (UBA)0.0000451Direct
BAR domain0.0000451Direct
BTB/POZ domain0.0000653Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0001267Direct
Sec1/munc18-like (SM) proteins0.0001267Direct
Calcium ATPase, transduction domain A0.0003892Direct
Hect, E3 ligase catalytic domain0.000892Direct
Intermediate filament protein, coiled coil region0.002092Inherited
FYVE, a phosphatidylinositol-3-phosphate binding domain0.002947Inherited
SH3-domain0.01757Inherited
Nucleosome core histones0.03988Inherited
Phosphotyrosine-binding domain (PTB)0.06354Inherited
RecA protein-like (ATPase-domain)0.06354Inherited
Armadillo repeat0.1155Inherited
Clathrin adaptor core protein0.1155Inherited
Group II chaperonin (CCT, TRIC), apical domain0.1204Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1938Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PX domain0Direct
Skp1 dimerisation domain-like0Direct
DLC0Direct
Cullin homology domain0.000000000216Direct
Cullin repeat-like0.000000007177Direct
Integrin domains0.000004417Direct
Activating enzymes of the ubiquitin-like proteins0.000007913Direct
Metal cation-transporting ATPase, ATP-binding domain N0.00001434Direct
Calcium ATPase, transmembrane domain M0.00002025Direct
Cupredoxins0.00002075Direct
Tubby C-terminal domain-like0.00002075Direct
Lamin A/C globular tail domain0.00005686Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00005882Direct
Sec1/munc18-like (SM) proteins0.00005882Direct
Calcium ATPase, transduction domain A0.0001284Direct
POZ domain0.0002404Direct
Hect, E3 ligase catalytic domain0.0004229Direct
Intermediate filament protein, coiled coil region0.001006Inherited
BAR/IMD domain-like0.008443Inherited
SH3-domain0.01358Inherited
ENTH/VHS domain0.01596Inherited
Protein kinase-like (PK-like)0.05171Inherited
Histone-fold0.05893Inherited
ARM repeat0.0966Inherited
Clathrin adaptor appendage domain0.1064Inherited
GroEL apical domain-like0.107Inherited
"Winged helix" DNA-binding domain0.1403Inherited
GroEL-intermediate domain like0.1757Inherited
GroEL equatorial domain-like0.1757Inherited
SNARE-like0.2808Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.00001434Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.00002075Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0001408Direct
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.002668Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1757Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.1757Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.000009953Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.001006Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1757Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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