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Worm Phenotype (WP): cell corpse number variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ + + 3:   cell death variant [WBPhenotype:0000729] <3>(58|51) (58|15|5)
+ + 2:   programmed cell death variant [WBPhenotype:0001172] <3>(56|48) (56|14|5)
+ 1:   apoptosis variant [WBPhenotype:0000730] <13>(51|44) (51|12|5)
0:   cell corpse number variant [WBPhenotype:0000590] <2>(29|29) (29|9|5)
- 1:   accumulated cell corpses [WBPhenotype:0000241] <2>(24|25) (24|9|5)
- 1:   cell corpse number decreased [WBPhenotype:0002045](4|2) (4|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
PX domain0Direct
DLC0Direct
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.0000000002937Direct
Cullin repeat-like0.000000009693Direct
Integrin domains0.000005656Direct
Activating enzymes of the ubiquitin-like proteins0.00001022Direct
Metal cation-transporting ATPase, ATP-binding domain N0.00001879Direct
Tubby C-terminal domain-like0.0000264Direct
Cupredoxins0.0000264Direct
Calcium ATPase, transmembrane domain M0.00002646Direct
Lamin A/C globular tail domain0.00007286Direct
Sec1/munc18-like (SM) proteins0.00007468Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00007468Direct
Calcium ATPase, transduction domain A0.0001651Direct
POZ domain0.0003531Direct
Hect, E3 ligase catalytic domain0.0005292Direct
Intermediate filament protein, coiled coil region0.001254Inherited
BAR/IMD domain-like0.009539Inherited
SH3-domain0.01512Inherited
ENTH/VHS domain0.01795Inherited
Protein kinase-like (PK-like)0.05481Inherited
Histone-fold0.06402Inherited
Clathrin adaptor appendage domain0.1162Inherited
GroEL apical domain-like0.1162Inherited
"Winged helix" DNA-binding domain0.1496Inherited
GroEL-intermediate domain like0.189Inherited
GroEL equatorial domain-like0.189Inherited
ARM repeat0.2333Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
PX domain0Direct
Cullin repeat0Direct
DLC0Direct
Myotubularin-like phosphatases0Direct
SCF ubiquitin ligase complex WHB domain0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Integrin domains0Direct
Skp1 dimerisation domain-like0Direct
Arginine methyltransferase0Direct
Cullin homology domain0.0000000009921Direct
Ephrin ectodomain0.000009967Direct
BAR domain0.00004644Direct
Ubiquitin activating enzymes (UBA)0.00004644Direct
BTB/POZ domain0.0000614Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0001306Direct
Sec1/munc18-like (SM) proteins0.0001306Direct
Calcium ATPase, transduction domain A0.0004062Direct
Hect, E3 ligase catalytic domain0.0009163Direct
Intermediate filament protein, coiled coil region0.002152Inherited
FYVE, a phosphatidylinositol-3-phosphate binding domain0.002812Inherited
SH3-domain0.0169Inherited
Phoshoinositide 3-kinase (PI3K), catalytic domain0.03384Inherited
Nucleosome core histones0.03846Inherited
Phosphotyrosine-binding domain (PTB)0.06235Inherited
RecA protein-like (ATPase-domain)0.06235Inherited
Clathrin adaptor core protein0.114Inherited
Armadillo repeat0.114Inherited
Group II chaperonin (CCT, TRIC), apical domain0.1182Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1908Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
DLC0Direct
PX domain0Direct
Cullin homology domain0.0000000002328Direct
Cullin repeat-like0.000000007728Direct
Integrin domains0.000004599Direct
Activating enzymes of the ubiquitin-like proteins0.000008315Direct
Metal cation-transporting ATPase, ATP-binding domain N0.00001532Direct
Tubby C-terminal domain-like0.00002156Direct
Cupredoxins0.00002156Direct
Calcium ATPase, transmembrane domain M0.0000216Direct
Lamin A/C globular tail domain0.00005961Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0000611Direct
Sec1/munc18-like (SM) proteins0.0000611Direct
Calcium ATPase, transduction domain A0.0001355Direct
POZ domain0.000291Direct
Hect, E3 ligase catalytic domain0.0004379Direct
Intermediate filament protein, coiled coil region0.001046Inherited
BAR/IMD domain-like0.008196Inherited
SH3-domain0.0131Inherited
ENTH/VHS domain0.01559Inherited
Protein kinase-like (PK-like)0.04868Inherited
Histone-fold0.05707Inherited
Clathrin adaptor appendage domain0.1053Inherited
GroEL apical domain-like0.1053Inherited
"Winged helix" DNA-binding domain0.1364Inherited
GroEL equatorial domain-like0.1737Inherited
GroEL-intermediate domain like0.1737Inherited
ARM repeat0.216Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.00001532Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.00002156Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0001499Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.1737Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1737Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.00001064Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.001046Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1737Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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