SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): muscle system morphology variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ 1:   organ system morphology variant [WBPhenotype:0000534] <9>(98|101) (99|48|16)
0:   muscle system morphology variant [WBPhenotype:0000603] <2>(21|23) (21|16|5)
- 1:   nonstriated muscle morphology variant [WBPhenotype:0000923] <3>(0|0) (0|0|0)
- 1:   striated muscle morphology variant [WBPhenotype:0000924] <2>(20|23) (20|16|5)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
Spectrin repeat0.0000001412Direct
Calpain large subunit, middle domain (domain III)0.0000003267Direct
SH2 domain0.0000003589Direct
SH3-domain0.0000005367Direct
PH domain-like0.00001008Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0000138Direct
Calponin-homology domain, CH-domain0.00002067Direct
Myosin rod fragments0.00003214Direct
Second domain of FERM0.00009341Direct
Immunoglobulin0.0003683Direct
Voltage-gated potassium channels0.0005146Direct
Fibronectin type III0.003386Inherited
DBL homology domain (DH-domain)0.00933Inherited
Tropomyosin0.01331Inherited
Troponin coil-coiled subunits0.01802Inherited
EGF/Laminin0.01894Inherited
Growth factor receptor domain0.02007Inherited
Cysteine-rich domain0.02007Inherited
Actin-like ATPase domain0.1317Inherited
Glutathione synthetase ATP-binding domain-like0.2869Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
Spectrin repeat0.0000001339Direct
SH3-domain0.0000004087Direct
SH2 domain0.0000005011Direct
Calpain large subunit, middle domain (domain III)0.0000006875Direct
Calponin-homology domain, CH-domain0.00001574Direct
Pleckstrin-homology domain (PH domain)0.00001905Direct
LIM domain0.00004195Direct
Calpain large subunit, catalytic domain (domain II)0.00005315Direct
EF-hand modules in multidomain proteins0.00005428Direct
Myosin rod fragments0.00005649Direct
Third domain of FERM0.0001066Direct
Second domain of FERM0.0001275Direct
First domain of FERM0.0001522Direct
I set domains0.0005279Direct
Synaptotagmin-like (S variant)0.001333Inherited
Fibronectin type III0.00271Inherited
PLC-like (P variant)0.004027Inherited
DBL homology domain (DH-domain)0.00762Inherited
Tropomyosin0.01098Inherited
Laminin-type module0.01499Inherited
Lamin A/C globular tail domain0.01499Inherited
Actin/HSP700.1171Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Integrin domains0Direct
Spectrin repeat0.0000001141Direct
Calpain large subunit, middle domain (domain III)0.0000002646Direct
SH2 domain0.0000002907Direct
SH3-domain0.0000004354Direct
PH domain-like0.000008248Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.00001131Direct
Calponin-homology domain, CH-domain0.00001696Direct
Myosin rod fragments0.00002641Direct
Second domain of FERM0.00007709Direct
Immunoglobulin0.0003055Direct
Voltage-gated potassium channels0.0004279Direct
Fibronectin type III0.002872Inherited
DBL homology domain (DH-domain)0.008025Inherited
Tropomyosin0.0115Inherited
Troponin coil-coiled subunits0.01564Inherited
EGF/Laminin0.01646Inherited
Growth factor receptor domain0.01747Inherited
Cysteine-rich domain0.01747Inherited
Actin-like ATPase domain0.12Inherited
Glutathione synthetase ATP-binding domain-like0.268Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54001,49758
  • 54001 - Cysteine proteinases
  • 49758 - Calpain large subunit, middle domain (domain III)
  • 0.00000006955Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.00000006955Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.000006352Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.0000128Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00001827Direct
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.0001844Direct
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.0002215Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0005709Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00254Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00366Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.004125Inherited
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.004125Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.004125Inherited
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.0115Inherited
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.01564Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.12Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0000000001399Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.00000001043Direct
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.0001431Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.001111Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.001239Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)