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Worm Phenotype (WP): reproductive system morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ 1:   organ system morphology variant [WBPhenotype:0000534] <9>(98|101) (99|48|16)
0:   reproductive system morphology variant [WBPhenotype:0000605] <5>(49|49) (51|18|6)
- 1:   gonad morphology variant [WBPhenotype:0001355] <10>(29|29) (29|9|2)
- 1:   hermaphrodite reproductive system morphology variant [WBPhenotype:0001335] <3>(22|22) (25|8|2)
- 1:   cloacal morphology variant [WBPhenotype:0000908] <2>(0|0) (0|0|0)
- 1:   connection of gonad variant [WBPhenotype:0000665](0|0) (0|0|0)
- 1:   male reproductive system morphology variant [WBPhenotype:0001306](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Ribosomal proteins S24e, L23 and L15e0Direct
GroEL equatorial domain-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Nop domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0Direct
14-3-3 protein0Direct
GroEL apical domain-like0.00000000148Direct
Multidrug efflux transporter AcrB transmembrane domain0.000004041Direct
HMG-box0.00002333Direct
Retrovirus zinc finger-like domains0.000029Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00008307Direct
Sm-like ribonucleoproteins0.0001916Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0003224Direct
RNA-binding domain, RBD0.0003279Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0004144Direct
RBP11-like subunits of RNA polymerase0.0005081Direct
GINS helical bundle-like0.0005081Direct
"Winged helix" DNA-binding domain0.0005616Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0008974Direct
Zn-binding ribosomal proteins0.0009647Direct
Cullin homology domain0.0009647Direct
S15/NS1 RNA-binding domain0.002124Inherited
Class II aaRS ABD-related0.002216Inherited
Nucleic acid-binding proteins0.003065Inherited
Translation proteins0.003268Inherited
L30e-like0.004313Inherited
TAZ domain0.005403Inherited
Translational machinery components0.005403Inherited
WD40 repeat-like0.00985Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.01191Inherited
Class II aaRS and biotin synthetases0.01749Inherited
Translation proteins SH3-like domain0.02725Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02933Inherited
Histone-fold0.03472Inherited
ARM repeat0.03506Inherited
P-loop containing nucleoside triphosphate hydrolases0.09278Inherited
Activating enzymes of the ubiquitin-like proteins0.1011Inherited
Prefoldin0.1011Inherited
Smc hinge domain0.235Inherited
Subtilisin-like0.235Inherited
S-adenosylmethionine synthetase0.235Inherited
Nucleotide-diphospho-sugar transferases0.424Inherited
Cysteine-rich domain0.7631Inherited
Tubulin nucleotide-binding domain-like0.8423Inherited
beta-beta-alpha zinc fingers0.8903Inherited
Tubulin C-terminal domain-like0.928Inherited
Protein kinase-like (PK-like)1Inherited
NAD(P)-binding Rossmann-fold domains1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Nop domain0Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Integrin domains0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
POU-specific domain0Direct
RNA-polymerase beta0Direct
14-3-3 protein0Direct
MIF4G domain-like0Direct
Proteasome subunits0.000000008651Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000004733Direct
Multidrug efflux transporter AcrB transmembrane domain0.000008865Direct
Laminin-type module0.00001668Direct
Tandem AAA-ATPase domain0.00005354Direct
HMG-box0.00008673Direct
Retrovirus zinc finger-like domains0.00009461Direct
Ubiquitin activating enzymes (UBA)0.0001155Direct
Canonical RBD0.0001477Direct
RecA protein-like (ATPase-domain)0.000581Direct
Glycosyl transferases group 10.0007849Direct
Anticodon-binding domain of Class II aaRS0.0007849Direct
Anticodon-binding domain0.0007849Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.001585Inherited
WD40-repeat0.002891Inherited
L30e/L7ae ribosomal proteins0.00328Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.003917Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.02374Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.04424Inherited
Elongation factors0.04957Inherited
Forkhead DNA-binding domain0.05819Inherited
Actin/HSP700.06179Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.06389Inherited
Nucleosome core histones0.07177Inherited
Translational machinery components0.09038Inherited
Prefoldin0.1403Inherited
Cold shock DNA-binding domain-like0.1598Inherited
Subtilases0.2168Inherited
Proprotein convertase P-domain0.2168Inherited
Smc hinge domain0.2168Inherited
Chromo domain0.2168Inherited
S-adenosylmethionine synthetase0.2168Inherited
Cyclin0.3679Inherited
Clathrin adaptor core protein0.4823Inherited
I set domains0.521Inherited
Tubulin, GTPase domain0.8271Inherited
Tubulin, C-terminal domain0.916Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL-intermediate domain like0Direct
GroEL equatorial domain-like0Direct
14-3-3 protein0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Nop domain0Direct
GroEL apical domain-like0.000000001185Direct
Multidrug efflux transporter AcrB transmembrane domain0.000003304Direct
HMG-box0.00001915Direct
Retrovirus zinc finger-like domains0.00002383Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00006852Direct
Sm-like ribonucleoproteins0.0001584Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0002673Direct
RNA-binding domain, RBD0.000272Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0003442Direct
GINS helical bundle-like0.0004224Direct
RBP11-like subunits of RNA polymerase0.0004224Direct
"Winged helix" DNA-binding domain0.0004677Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0007514Direct
Cullin homology domain0.0008084Direct
Zn-binding ribosomal proteins0.0008084Direct
S15/NS1 RNA-binding domain0.001792Inherited
Class II aaRS ABD-related0.001871Inherited
Nucleic acid-binding proteins0.002596Inherited
Translation proteins0.002771Inherited
L30e-like0.003668Inherited
Translational machinery components0.004603Inherited
TAZ domain0.004603Inherited
WD40 repeat-like0.008481Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.01028Inherited
Class II aaRS and biotin synthetases0.01517Inherited
Translation proteins SH3-like domain0.02387Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.02573Inherited
Histone-fold0.03058Inherited
ARM repeat0.03089Inherited
Chromo domain-like0.05852Inherited
P-loop containing nucleoside triphosphate hydrolases0.08359Inherited
Prefoldin0.09129Inherited
Activating enzymes of the ubiquitin-like proteins0.09129Inherited
S-adenosylmethionine synthetase0.2177Inherited
Subtilisin-like0.2177Inherited
Smc hinge domain0.2177Inherited
Nucleotide-diphospho-sugar transferases0.4026Inherited
Growth factor receptor domain0.7433Inherited
Cysteine-rich domain0.7433Inherited
Tubulin nucleotide-binding domain-like0.8246Inherited
beta-beta-alpha zinc fingers0.8746Inherited
Tubulin C-terminal domain-like0.9138Inherited
Protein kinase-like (PK-like)1Inherited
NAD(P)-binding Rossmann-fold domains1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0001319Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0003442Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0004224Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.0004224Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.0008084Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.001792Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.004616Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.009337Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.01784Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.02387Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02573Inherited
    49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0.2177Inherited
    52743,49785
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0.2177Inherited
    55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.2177Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.8246Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0001319Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0003442Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.02573Inherited
    55973,55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.2177Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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