SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): reproductive system development variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ 1:   organ system development variant [WBPhenotype:0000530] <10>(78|72) (80|31|12)
0:   reproductive system development variant [WBPhenotype:0000624] <10>(47|39) (48|20|8)
- 1:   vulva development variant [WBPhenotype:0000699] <3>(17|13) (17|3|1)
- 1:   copulatory structure development variant [WBPhenotype:0000429] <2>(0|0) (0|0|0)
- 1:   gonad development variant [WBPhenotype:0000691] <2>(18|15) (19|8|3)
- 1:   sex muscle development variant [WBPhenotype:0000669] <2>(0|0) (0|0|0)
- 1:   vulva uterus connection defective [WBPhenotype:0000283] <2>(10|8) (10|6|3)
- 1:   feminization of XX and XO animals [WBPhenotype:0000687] <1>(1|0) (1|0|0)
- 1:   fewer eggs in utero [WBPhenotype:0002019](0|0) (0|0|0)
- 1:   gonad migration variant [WBPhenotype:0000690](0|1) (0|0|0)
- 1:   no uterus [WBPhenotype:0000401](0|0) (0|0|0)
- 1:   sexual maturation defective [WBPhenotype:0000434](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Cullin repeat-like0.00003697Direct
Plexin repeat0.00004062Direct
Sema domain0.00004062Direct
E2F-DP heterodimerization region0.00009498Direct
Integrin domains0.00009498Direct
Cdc48 domain 2-like0.00009498Direct
ADC-like0.00009498Direct
Cullin homology domain0.0001286Direct
F1F0 ATP synthase subunit C0.0004206Direct
Immunoglobulin0.0006613Direct
Chromo domain-like0.001123Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.001984Inherited
Sm-like ribonucleoproteins0.005359Inherited
Bromodomain0.005359Inherited
HMG-box0.02508Inherited
Fibronectin type III0.02735Inherited
FYVE/PHD zinc finger0.03931Inherited
SET domain0.0415Inherited
Acyl-CoA N-acyltransferases (Nat)0.04378Inherited
Cadherin-like0.04403Inherited
EGF/Laminin0.05927Inherited
WD40 repeat-like0.06314Inherited
Cystine-knot cytokines0.07743Inherited
Cyclin-like0.09535Inherited
Nucleic acid-binding proteins0.1102Inherited
GroEL equatorial domain-like0.1127Inherited
GroEL-intermediate domain like0.1127Inherited
GroEL apical domain-like0.1127Inherited
HIT/MYND zinc finger-like0.1836Inherited
Arginase/deacetylase0.1836Inherited
Protein kinase-like (PK-like)0.2719Inherited
P-loop containing nucleoside triphosphate hydrolases0.3221Inherited
TPR-like0.3435Inherited
SNARE-like0.4997Inherited
"Winged helix" DNA-binding domain0.5113Inherited
Nucleotide-diphospho-sugar transferases0.5303Inherited
Intermediate filament protein, coiled coil region0.6327Inherited
TSP-1 type 1 repeat0.6327Inherited
Tubulin nucleotide-binding domain-like0.9084Inherited
NAD(P)-binding Rossmann-fold domains0.9209Inherited
F-box domain0.9479Inherited
Homeodomain-like0.975Inherited
Tubulin C-terminal domain-like0.9775Inherited
RNA-binding domain, RBD1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin domains0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
PHD domain0.00001033Direct
Sema domain0.00001341Direct
Proteasome subunits0.00001705Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.0000717Direct
Plexin repeat0.0000717Direct
Cullin repeat0.0000717Direct
SCF ubiquitin ligase complex WHB domain0.0000717Direct
Cdc48 N-terminal domain-like0.000143Direct
Cell cycle transcription factor e2f-dp0.000143Direct
Cdc48 domain 2-like0.000143Direct
Cullin homology domain0.0002248Direct
F1F0 ATP synthase subunit C0.0006311Direct
Transforming growth factor (TGF)-beta0.0006311Direct
N-acetyl transferase, NAT0.0008137Direct
RecA protein-like (ATPase-domain)0.001686Inherited
Bromodomain0.004225Inherited
Armadillo repeat0.005092Inherited
I set domains0.007179Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0122Inherited
Fibronectin type III0.02246Inherited
Cadherin0.03056Inherited
TBP-associated factors, TAFs0.03056Inherited
Histone lysine methyltransferases0.03489Inherited
Chromo domain0.04022Inherited
Pumilio repeat0.05866Inherited
WD40-repeat0.0638Inherited
Histone deacetylase, HDAC0.1632Inherited
Clathrin adaptor core protein0.1632Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1632Inherited
Group II chaperonin (CCT, TRIC), apical domain0.1632Inherited
Protein kinases, catalytic subunit0.2445Inherited
PDZ domain0.4702Inherited
Intermediate filament protein, coiled coil region0.6044Inherited
Tubulin, GTPase domain0.8877Inherited
Homeodomain0.9028Inherited
Tubulin, C-terminal domain0.964Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Cullin repeat-like0.00003041Direct
Plexin repeat0.00003342Direct
Sema domain0.00003342Direct
E2F-DP heterodimerization region0.00007836Direct
Integrin domains0.00007836Direct
ADC-like0.00007836Direct
Cdc48 domain 2-like0.00007836Direct
Cullin homology domain0.0001062Direct
F1F0 ATP synthase subunit C0.0003494Direct
Immunoglobulin0.0005519Direct
Chromo domain-like0.0009411Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0009437Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.001672Inherited
Sm-like ribonucleoproteins0.004568Inherited
Bromodomain0.004568Inherited
HMG-box0.02193Inherited
Fibronectin type III0.02396Inherited
FYVE/PHD zinc finger0.03472Inherited
SET domain0.03671Inherited
Acyl-CoA N-acyltransferases (Nat)0.03873Inherited
Cadherin-like0.03897Inherited
EGF/Laminin0.05276Inherited
WD40 repeat-like0.05631Inherited
Cystine-knot cytokines0.06949Inherited
Cyclin-like0.08596Inherited
Nucleic acid-binding proteins0.0998Inherited
GroEL-intermediate domain like0.102Inherited
GroEL equatorial domain-like0.102Inherited
GroEL apical domain-like0.102Inherited
HIT/MYND zinc finger-like0.1687Inherited
Arginase/deacetylase0.1687Inherited
Protein kinase-like (PK-like)0.2534Inherited
P-loop containing nucleoside triphosphate hydrolases0.3024Inherited
TPR-like0.3234Inherited
SNARE-like0.4777Inherited
"Winged helix" DNA-binding domain0.4893Inherited
Nucleotide-diphospho-sugar transferases0.5081Inherited
Intermediate filament protein, coiled coil region0.6109Inherited
TSP-1 type 1 repeat0.6109Inherited
Tubulin nucleotide-binding domain-like0.8934Inherited
NAD(P)-binding Rossmann-fold domains0.9064Inherited
F-box domain0.9343Inherited
Homeodomain-like0.9631Inherited
Tubulin C-terminal domain-like0.966Inherited
RNA-binding domain, RBD1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.00002107Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.00003342Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0.00003342Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00007836Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.00007836Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.00007836Direct
    57903,57903
  • 57903 - FYVE/PHD zinc finger
  • 57903 - FYVE/PHD zinc finger
  • 0.0003494Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.001998Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.01303Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.07112Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.08596Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.08596Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.102Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.102Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.102Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.8934Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.00003342Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.004568Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.01303Inherited
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.02193Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.06142Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.102Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)