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Worm Phenotype (WP): brood size variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + 4:   organ system physiology variant [WBPhenotype:0000575] <8>(430|511) (430|222|63)
+ + + 3:   reproductive system physiology variant [WBPhenotype:0000613] <4>(424|507) (424|220|63)
+ + 2:   fertility variant [WBPhenotype:0000145] <4>(422|506) (422|219|62)
+ 1:   hermaphrodite fertility variant [WBPhenotype:0000806] <4>(378|463) (378|204|59)
0:   brood size variant [WBPhenotype:0000673] <1>(14|17) (18|4|1)
- 1:   reduced brood size [WBPhenotype:0000154](9|15) (13|4|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
eIF4e-like0Direct
ARM repeat0.0000000008457Direct
P-loop containing nucleoside triphosphate hydrolases0.000000622Direct
Calponin-homology domain, CH-domain0.000000872Direct
PH domain-like0.000001369Direct
RNA-binding domain, RBD0.000007256Direct
WD40 repeat-like0.000008087Direct
Sm-like ribonucleoproteins0.0001007Direct
Spectrin repeat0.0001021Direct
Actin-like ATPase domain0.0001868Direct
Nucleotide-binding domain0.0002182Direct
Annexin0.0003698Direct
"Winged helix" DNA-binding domain0.0009364Direct
Activating enzymes of the ubiquitin-like proteins0.001534Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
D-aminoacid oxidase, N-terminal domain0Direct
Choline kinase0Direct
Translation initiation factor eIF4e0Direct
Actin/HSP700.000003387Direct
Calponin-homology domain, CH-domain0.000005586Direct
Canonical RBD0.00002233Direct
WD40-repeat0.00002808Direct
Armadillo repeat0.0000481Direct
COMT-like0.00007634Direct
Ubiquitin activating enzymes (UBA)0.00007634Direct
D-aminoacid oxidase-like0.00007634Direct
Spectrin repeat0.0001023Direct
Erythroid transcription factor GATA-10.0005406Direct
PDZ domain0.0005414Direct
Annexin0.0005663Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0009538Direct
NagD-like0.001168Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
eIF4e-like0Direct
ARM repeat0.0000000006759Direct
P-loop containing nucleoside triphosphate hydrolases0.0000005053Direct
Calponin-homology domain, CH-domain0.0000007093Direct
PH domain-like0.000001116Direct
RNA-binding domain, RBD0.000005935Direct
WD40 repeat-like0.000006615Direct
Sm-like ribonucleoproteins0.00008311Direct
Spectrin repeat0.00008429Direct
Actin-like ATPase domain0.0001544Direct
Nucleotide-binding domain0.0001805Direct
Annexin0.0003068Direct
"Winged helix" DNA-binding domain0.0007844Direct
Activating enzymes of the ubiquitin-like proteins0.001289Inherited
The spindle assembly checkpoint protein mad20.001314Inherited
Ribosomal proteins S24e, L23 and L15e0.001314Inherited
Tim10-like0.001314Inherited
Tubulin nucleotide-binding domain-like0.001603Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51971,54373
  • 51971 - Nucleotide-binding domain
  • 54373 - FAD-linked reductases, C-terminal domain
  • 0Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.00002353Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.00002637Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.001603Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.000003845Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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