SUPERFAMILY 1.75 HMM library and genome assignments server

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Worm Phenotype (WP): growth rate variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + 3:   organism physiology variant [WBPhenotype:0000576] <10>(355|415) (355|191|56)
+ + 2:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(346|406) (348|189|55)
+ 1:   growth variant [WBPhenotype:0000030] <5>(199|260) (202|113|38)
0:   growth rate variant [WBPhenotype:0000676](9|6) (11|2|2)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Voltage-gated potassium channels0.00000275Direct
PH domain-like0.000002931Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.00005497Direct
Immunoglobulin0.0001092Direct
Homeodomain-like0.000149Direct
Spectrin repeat0.0004403Direct
Bet v1-like0.0004597Direct
Band 7/SPFH domain0.0004597Direct
cAMP-binding domain-like0.0008815Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Pleckstrin-homology domain (PH domain)0.0000001092Direct
I set domains0.00001611Direct
Voltage-gated potassium channels0.0000219Direct
Myb/SANT domain0.0000724Direct
Spectrin repeat0.0003817Direct
cAMP-binding domain0.0008323Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Voltage-gated potassium channels0.000002246Direct
PH domain-like0.000002395Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0000453Direct
Immunoglobulin0.00009019Direct
Homeodomain-like0.0001231Direct
Spectrin repeat0.0003658Direct
Bet v1-like0.0003821Direct
Band 7/SPFH domain0.0003821Direct
cAMP-binding domain-like0.0007379Direct
Fibronectin type III0.0009138Direct
"Winged helix" DNA-binding domain0.0009508Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00007413Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0004693Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0001239Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0005101Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)