SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): transgene subcellular localization variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + 8:   Variant [WBPhenotype:0000886] <4>
+ + + + + + + 7:   physiology variant [WBPhenotype:0000519] <7>(489|563) (489|241|65)
+ + + + + + 6:   organism physiology variant [WBPhenotype:0000576] <10>(357|420) (358|193|57)
+ + + + + 5:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(347|410) (350|191|56)
+ + + + 4:   organism metabolism processing variant [WBPhenotype:0000027] <25>(171|182) (176|81|24)
+ + + 3:   gene expression variant [WBPhenotype:0000717] <10>(122|134) (129|62|19)
+ + 2:   transgene expression variant [WBPhenotype:0000306] <3>(84|95) (88|41|13)
+ 1:   pattern of transgene expression variant [WBPhenotype:0000961] <2>(47|55) (50|26|11)
0:   transgene subcellular localization variant [WBPhenotype:0000679](29|38) (32|20|8)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Cu,Zn superoxide dismutase-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
JAB1/MPN domain0Direct
Clathrin adaptor appendage domain0Direct
HSP90 C-terminal domain0Direct
Ribosomal protein L10-like0Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
14-3-3 protein0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Subdomain of clathrin and coatomer appendage domain0Direct
UBC-like0.00000000000002035Direct
Tubulin C-terminal domain-like0.0000000000000327Direct
Tubulin nucleotide-binding domain-like0.0000000000002188Direct
HSP20-like chaperones0.000000000003408Direct
Acid proteases0.0000000005623Direct
SNARE-like0.0000000007816Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.00000001932Direct
Cyclophilin-like0.00000008192Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0000001275Direct
Hect, E3 ligase catalytic domain0.0000001275Direct
RING/U-box0.0000002346Direct
B-box zinc-binding domain0.0000002503Direct
FKBP-like0.0000262Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00003478Direct
Activating enzymes of the ubiquitin-like proteins0.00003589Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0001347Direct
ENTH/VHS domain0.0008682Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
PDI-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ubiquitin carboxyl-terminal hydrolase UCH-L0Direct
Cu,Zn superoxide dismutase-like0Direct
Quinoprotein alcohol dehydrogenase-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Clathrin coat assembly domain0Direct
Anticodon-binding domain of Class II aaRS0Direct
14-3-3 protein0Direct
Trunk domain of Sec23/240Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Heat shock protein 90, HSP90, N-terminal domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
HSP90 C-terminal domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Hsp90 middle domain0Direct
beta-sandwich domain of Sec23/240Direct
UBC-related0.000000000000003428Direct
Tubulin, C-terminal domain0.0000000000003954Direct
Tubulin, GTPase domain0.000000000002246Direct
RING finger domain, C3HC40.00000000001113Direct
Pepsin-like0.00000000003168Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.00000007335Direct
Hect, E3 ligase catalytic domain0.0000004117Direct
Cyclophilin (peptidylprolyl isomerase)0.0000004559Direct
B-box zinc-binding domain0.000001351Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.000002283Direct
HSP200.000002283Direct
Extended PAW domain0.000008171Direct
Clathrin adaptor core protein0.00001259Direct
Armadillo repeat0.00004949Direct
FKBP immunophilin/proline isomerase0.00006813Direct
RecA protein-like (ATPase-domain)0.00006897Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00006897Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0002992Direct
Ubiquitin activating enzymes (UBA)0.0003725Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Clathrin adaptor appendage domain0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
14-3-3 protein0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ribosomal protein L10-like0Direct
JAB1/MPN domain0Direct
Cu,Zn superoxide dismutase-like0Direct
Zn-finger domain of Sec23/240Direct
HSP90 C-terminal domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
UBC-like0.00000000000001607Direct
Tubulin C-terminal domain-like0.00000000000002584Direct
Tubulin nucleotide-binding domain-like0.0000000000001731Direct
HSP20-like chaperones0.000000000002707Direct
Acid proteases0.0000000004491Direct
SNARE-like0.0000000006245Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.00000001553Direct
Cyclophilin-like0.00000006609Direct
Hect, E3 ligase catalytic domain0.0000001029Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0000001029Direct
RING/U-box0.0000001898Direct
B-box zinc-binding domain0.0000002026Direct
FKBP-like0.00002151Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00002859Direct
Activating enzymes of the ubiquitin-like proteins0.00002951Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0001113Direct
ENTH/VHS domain0.0007266Direct
Lipovitellin-phosvitin complex; beta-sheet shell regions0.000898Direct
Lipovitellin-phosvitin complex, superhelical domain0.000898Direct
Sec1/munc18-like (SM) proteins0.000898Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0Direct
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54495,46934
  • 54495 - UBC-like
  • 46934 - UBA-like
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.0000000000001731Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0000001029Direct
    57850,57845
  • 57850 - RING/U-box
  • 57845 - B-box zinc-binding domain
  • 0.00008873Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0001113Direct
    57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.000368Direct
    63380,52343
  • 63380 - Riboflavin synthase domain-like
  • 52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain
  • 0.000898Direct
    48431,56968
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0.000898Direct
    56968,48431
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 0.000898Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0Direct
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0000001029Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0001113Direct
    57850,57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.0001113Direct
    56968,48431,56968
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0.000898Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)