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Worm Phenotype (WP): vulva morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + 3:   organ system morphology variant [WBPhenotype:0000534] <9>(98|101) (99|48|16)
+ + 2:   reproductive system morphology variant [WBPhenotype:0000605] <5>(49|49) (51|18|6)
+ 1:   hermaphrodite reproductive system morphology variant [WBPhenotype:0001335] <3>(22|22) (25|8|2)
0:   vulva morphology variant [WBPhenotype:0000695] <5>(22|22) (25|8|2)
- 1:   vulval invagination variant L4 [WBPhenotype:0000510] <1>(2|0) (2|0|0)
- 1:   bivulva [WBPhenotype:0002011](0|0) (0|0|0)
- 1:   everted vulva [WBPhenotype:0000696](2|3) (2|1|0)
- 1:   protruding vulva [WBPhenotype:0000697](14|14) (14|6|2)
- 1:   protrusion at vulval region [WBPhenotype:0001096](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Nop domain0Direct
Multidrug efflux transporter AcrB transmembrane domain0Direct
"Winged helix" DNA-binding domain0.0000001194Direct
RNA-binding domain, RBD0.0000003273Direct
WD40 repeat-like0.0000004787Direct
GroEL equatorial domain-like0.000001324Direct
GroEL-intermediate domain like0.000001324Direct
GroEL apical domain-like0.000004038Direct
HMG-box0.00000583Direct
Prefoldin0.00001332Direct
ARM repeat0.00002937Direct
S-adenosylmethionine synthetase0.00009405Direct
GINS helical bundle-like0.00009405Direct
Activating enzymes of the ubiquitin-like proteins0.0003065Direct
Ribosomal proteins S24e, L23 and L15e0.0004163Direct
Subtilisin-like0.0004163Direct
Smc hinge domain0.001115Inherited
TAZ domain0.001115Inherited
beta-beta-alpha zinc fingers0.001685Inherited
Nucleotide-diphospho-sugar transferases0.3357Inherited
NAD(P)-binding Rossmann-fold domains1Inherited
Histone-fold1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nop domain0Direct
Multidrug efflux transporter AcrB transmembrane domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000008539Direct
Tandem AAA-ATPase domain0.000001587Direct
Canonical RBD0.000001941Direct
Group II chaperonin (CCT, TRIC), apical domain0.000003461Direct
WD40-repeat0.000005808Direct
HMG-box0.00001994Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.000074Direct
Group II chaperonin (CCT, TRIC), intermediate domain0.0001467Direct
Proprotein convertase P-domain0.0001467Direct
S-adenosylmethionine synthetase0.0001467Direct
MIF4G domain-like0.0001467Direct
Prefoldin0.0002318Direct
I set domains0.0002778Direct
Nucleosome core histones0.0005052Direct
Forkhead DNA-binding domain0.0005489Direct
Ubiquitin activating enzymes (UBA)0.0006463Direct
Subtilases0.0006463Direct
Smc hinge domain0.0006463Direct
Actin/HSP700.001676Inherited
Chromo domain0.04102Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Multidrug efflux transporter AcrB transmembrane domain0Direct
Nop domain0Direct
"Winged helix" DNA-binding domain0.00000009642Direct
RNA-binding domain, RBD0.0000002651Direct
WD40 repeat-like0.0000003881Direct
GroEL-intermediate domain like0.000001079Direct
GroEL equatorial domain-like0.000001079Direct
GroEL apical domain-like0.000003301Direct
HMG-box0.000004766Direct
Prefoldin0.00001092Direct
ARM repeat0.00002414Direct
GINS helical bundle-like0.00007759Direct
S-adenosylmethionine synthetase0.00007759Direct
Activating enzymes of the ubiquitin-like proteins0.0002542Direct
Ribosomal proteins S24e, L23 and L15e0.0003458Direct
Subtilisin-like0.0003458Direct
Nucleic acid-binding proteins0.0008727Direct
Chromo domain-like0.0009261Direct
TAZ domain0.0009343Direct
Smc hinge domain0.0009343Direct
Growth factor receptor domain0.0009691Direct
beta-beta-alpha zinc fingers0.001418Inherited
Nucleotide-diphospho-sugar transferases0.3158Inherited
NAD(P)-binding Rossmann-fold domains1Inherited
Histone-fold1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000001079Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000001079Direct
    49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0.00007759Direct
    52743,49785
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0.00007759Direct
    55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.00007759Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.0001048Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.001562Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.001732Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000001079Direct
    55973,55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.00007759Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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