SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): germ cell ionizing radiation response variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + + + 5:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   organism environmental stimulus response variant [WBPhenotype:0000738] <15>(138|128) (139|57|18)
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + 3:   cell homeostasis metabolism variant [WBPhenotype:0000585] <12>(60|54) (60|23|12)
+ + + 3:   organism stress response variant [WBPhenotype:0000067] <20>(75|63) (76|26|7)
+ + + 3:   organ system physiology variant [WBPhenotype:0000575] <8>(445|529) (445|229|63)
+ + 2:   cell stress response variant [WBPhenotype:0000142] <12>(20|17) (20|7|3)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ + 2:   reproductive system physiology variant [WBPhenotype:0000613] <6>(432|517) (432|223|63)
+ + 2:   organism ionizing radiation response variant [WBPhenotype:0000686] <4>(10|5) (10|0|0)
+ 1:   cell ionizing radiation response variant [WBPhenotype:0001324] <4>(9|5) (9|0|0)
+ 1:   germ cell physiology variant [WBPhenotype:0000987] <6>(28|19) (29|8|1)
0:   germ cell ionizing radiation response variant [WBPhenotype:0000712] <2>(6|3) (6|0|0)
- 1:   germ cell resistant ionizing radiation [WBPhenotype:0000737] <1>(3|0) (3|0|0)
- 1:   germ cell hypersensitive ionizing radiation [WBPhenotype:0000731](1|1) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
RING/U-box0.000000005814Direct
Di-copper centre-containing domain0.000000009216Direct
Hect, E3 ligase catalytic domain0.00001244Direct
Saposin0.0008987Direct
PLP-dependent transferases0.005863Inherited
Metallo-dependent phosphatases0.02827Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Hemocyanin middle domain0.00000008158Direct
Hect, E3 ligase catalytic domain0.000009089Direct
RING finger domain, C3HC40.00006669Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
RING/U-box0.000000004633Direct
Di-copper centre-containing domain0.000000007347Direct
Hect, E3 ligase catalytic domain0.00001012Direct
Saposin0.0007476Direct
PLP-dependent transferases0.004991Inherited
Metallo-dependent phosphatases0.02479Inherited


Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)