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Worm Phenotype (WP): cell cycle variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ 1:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ 1:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
0:   cell cycle variant [WBPhenotype:0000740] <5>(8|10) (8|4|1)
- 1:   cell cycle progression variant [WBPhenotype:0001995] <4>(6|9) (6|3|1)
- 1:   DNA damage checkpoint variant [WBPhenotype:0000741] <3>(0|0) (0|0|0)
- 1:   metaphase to anaphase transition defect [WBPhenotype:0001496] <2>(1|1) (1|1|0)
- 1:   cell cycle defective early emb [WBPhenotype:0001114] <1>(2|2) (2|0|0)
- 1:   interphase entry defective early emb [WBPhenotype:0001043](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00003502Direct
P-loop containing nucleoside triphosphate hydrolases0.0001025Direct
Cullin repeat-like0.0008239Direct
Cullin homology domain0.001742Inherited
Nucleic acid-binding proteins0.003861Inherited
UBC-like0.01142Inherited
TPR-like0.0163Inherited
Nucleotide-diphospho-sugar transferases0.0832Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Extended AAA-ATPase domain0.0000001946Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00002135Direct
Proteasome subunits0.00003926Direct
Cullin repeat0.0006624Direct
SCF ubiquitin ligase complex WHB domain0.0006624Direct
Motor proteins0.0007855Direct
Cullin homology domain0.001417Inherited
Cyclin0.001717Inherited
UBC-related0.004446Inherited
Tetratricopeptide repeat (TPR)0.0639Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0000288Direct
P-loop containing nucleoside triphosphate hydrolases0.00008462Direct
Cullin repeat-like0.0006893Direct
Cullin homology domain0.001466Inherited
Nucleic acid-binding proteins0.00328Inherited
UBC-like0.009843Inherited
TPR-like0.01412Inherited
Nucleotide-diphospho-sugar transferases0.07476Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0006893Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0.0006893Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.002646Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.006798Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.0006893Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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