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Worm Phenotype (WP): cell division variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <2>
+ + 2:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ 1:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
0:   cell division variant [WBPhenotype:0000746] <19>(51|54) (52|20|4)
- 1:   meiosis variant [WBPhenotype:0000775] <10>(34|32) (34|14|4)
- 1:   mitosis variant [WBPhenotype:0001743] <8>(10|12) (10|4|1)
- 1:   spindle variant [WBPhenotype:0002414] <8>(7|11) (7|4|0)
- 1:   cytokinesis variant [WBPhenotype:0002408] <5>(11|12) (11|2|0)
- 1:   cell cleavage variant [WBPhenotype:0000266] <2>(1|1) (1|1|0)
- 1:   cell division polarity variant [WBPhenotype:0001235] <2>(3|3) (3|0|0)
- 1:   VPC cell division variant [WBPhenotype:0000345] <1>(0|0) (0|0|0)
- 1:   anaphase variant [WBPhenotype:0002389] <1>(0|0) (0|0|0)
- 1:   cell division failure [WBPhenotype:0000417] <1>(0|0) (0|0|0)
- 1:   cell division precocious [WBPhenotype:0001495] <1>(0|0) (0|0|0)
- 1:   division axis defective [WBPhenotype:0001133] <1>(2|2) (2|2|0)
- 1:   cell division incomplete [WBPhenotype:0000371](0|0) (0|0|0)
- 1:   cell division slow [WBPhenotype:0000363](0|0) (0|0|0)
- 1:   cell division variant male [WBPhenotype:0001299](0|0) (0|0|0)
- 1:   metaphase variant [WBPhenotype:0002388](0|0) (0|0|0)
- 1:   multiple nuclei early emb [WBPhenotype:0001143](1|3) (1|1|0)
- 1:   pace of P lineage defective early emb [WBPhenotype:0000046](0|1) (0|0|0)
- 1:   sister cell division timing asynchrony reduced [WBPhenotype:0002369](2|1) (2|0|0)
- 1:   variable cell division timing [WBPhenotype:0002390](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Smc hinge domain0Direct
LEM domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Histone-fold0Direct
Profilin (actin-binding protein)0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
The spindle assembly checkpoint protein mad20Direct
Activating enzymes of the ubiquitin-like proteins0.000001969Direct
P-loop containing nucleoside triphosphate hydrolases0.00001177Direct
Skp1 dimerisation domain-like0.00001805Direct
Frizzled cysteine-rich domain0.00002722Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00004149Direct
ADC-like0.0002615Direct
post-AAA+ oligomerization domain-like0.0002615Direct
Cdc48 domain 2-like0.0002615Direct
Nucleic acid-binding proteins0.0005056Direct
S15/NS1 RNA-binding domain0.001125Inherited
GroEL-intermediate domain like0.001271Inherited
GroEL equatorial domain-like0.001271Inherited
CCCH zinc finger0.001817Inherited
Sm-like ribonucleoproteins0.003015Inherited
"Winged helix" DNA-binding domain0.004864Inherited
GroEL apical domain-like0.006722Inherited
POZ domain0.006737Inherited
ARM repeat0.01179Inherited
Actin-like ATPase domain0.01694Inherited
F1F0 ATP synthase subunit C0.04456Inherited
Ribosomal proteins S24e, L23 and L15e0.04456Inherited
Class II aaRS and biotin synthetases0.04534Inherited
p53-like transcription factors0.08251Inherited
Translation proteins SH3-like domain0.08251Inherited
Tubulin nucleotide-binding domain-like0.08251Inherited
Ribosomal protein S5 domain 2-like0.1256Inherited
Cyclin-like0.1318Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.1344Inherited
Translational machinery components0.1344Inherited
Tubulin C-terminal domain-like0.1419Inherited
L30e-like0.1435Inherited
TPR-like0.2145Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.2419Inherited
Prefoldin0.2533Inherited
BAR/IMD domain-like0.2994Inherited
Nucleotidylyl transferase0.4211Inherited
Calponin-homology domain, CH-domain0.438Inherited
Translation proteins0.4763Inherited
SNARE-like0.5673Inherited
GTPase activation domain, GAP0.6069Inherited
Homeodomain-like0.7992Inherited
PDZ domain-like0.8364Inherited
PX domain0.8741Inherited
Protein kinase-like (PK-like)0.9498Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0Direct
Smc hinge domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Proteasome subunits0Direct
LEM domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Profilin (actin-binding protein)0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000008248Direct
Extended AAA-ATPase domain0.0000002346Direct
RecA protein-like (ATPase-domain)0.000005847Direct
Skp1 dimerisation domain-like0.00001608Direct
BTB/POZ domain0.00002301Direct
Ubiquitin activating enzymes (UBA)0.00004846Direct
Frizzled cysteine-rich domain0.00004846Direct
DNA polymerase III clamp loader subunits, C-terminal domain0.000394Direct
Cdc48 domain 2-like0.000394Direct
Anticodon-binding domain0.000394Direct
Cdc48 N-terminal domain-like0.000394Direct
Anticodon-binding domain of Class II aaRS0.000394Direct
Group II chaperonin (CCT, TRIC), apical domain0.001067Inherited
DEP domain0.001686Inherited
Armadillo repeat0.002589Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.002657Inherited
Motor proteins0.00477Inherited
CCCH zinc finger0.004796Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.006541Inherited
Actin/HSP700.007866Inherited
G proteins0.0139Inherited
Translational machinery components0.02807Inherited
F1F0 ATP synthase subunit C0.03918Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.04106Inherited
Pumilio repeat0.07009Inherited
Tubulin, GTPase domain0.07535Inherited
Cold shock DNA-binding domain-like0.07756Inherited
Prefoldin0.122Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.122Inherited
L30e/L7ae ribosomal proteins0.122Inherited
Cyclin0.1315Inherited
Tubulin, C-terminal domain0.1315Inherited
Elongation factors0.1333Inherited
ABC transporter ATPase domain-like0.1989Inherited
Nitrogenase iron protein-like0.2369Inherited
Clathrin adaptor core protein0.3667Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.3667Inherited
Calponin-homology domain, CH-domain0.4273Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.4468Inherited
BCR-homology GTPase activation domain (BH-domain)0.4468Inherited
Protein serine/threonine phosphatase0.5821Inherited
Tetratricopeptide repeat (TPR)0.6588Inherited
PDZ domain0.6794Inherited
Homeodomain0.7898Inherited
Protein kinases, catalytic subunit0.829Inherited
PX domain0.8615Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
LEM domain0Direct
Profilin (actin-binding protein)0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
The spindle assembly checkpoint protein mad20Direct
Smc hinge domain0Direct
Histone-fold0Direct
Activating enzymes of the ubiquitin-like proteins0.000001595Direct
P-loop containing nucleoside triphosphate hydrolases0.000009578Direct
Skp1 dimerisation domain-like0.00001472Direct
Frizzled cysteine-rich domain0.00002222Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00003391Direct
Cdc48 domain 2-like0.0002152Direct
post-AAA+ oligomerization domain-like0.0002152Direct
ADC-like0.0002152Direct
Nucleic acid-binding proteins0.0004186Direct
CAD & PB1 domains0.0009376Direct
S15/NS1 RNA-binding domain0.0009376Direct
GroEL equatorial domain-like0.00106Inherited
GroEL-intermediate domain like0.00106Inherited
CCCH zinc finger0.001521Inherited
Sm-like ribonucleoproteins0.002545Inherited
"Winged helix" DNA-binding domain0.004131Inherited
GroEL apical domain-like0.005733Inherited
POZ domain0.005746Inherited
ARM repeat0.01016Inherited
Actin-like ATPase domain0.01471Inherited
F1F0 ATP synthase subunit C0.03939Inherited
Ribosomal proteins S24e, L23 and L15e0.03939Inherited
Class II aaRS and biotin synthetases0.04008Inherited
Translation proteins SH3-like domain0.07409Inherited
Tubulin nucleotide-binding domain-like0.07409Inherited
p53-like transcription factors0.07409Inherited
Ribosomal protein S5 domain 2-like0.1141Inherited
Cyclin-like0.1198Inherited
Translational machinery components0.1223Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.1223Inherited
Tubulin C-terminal domain-like0.1293Inherited
L30e-like0.1308Inherited
TPR-like0.1981Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.2244Inherited
Prefoldin0.2354Inherited
BAR/IMD domain-like0.2804Inherited
Nucleotidylyl transferase0.4003Inherited
Calponin-homology domain, CH-domain0.4172Inherited
Translation proteins0.4549Inherited
SNARE-like0.5455Inherited
GTPase activation domain, GAP0.585Inherited
Homeodomain-like0.7809Inherited
PDZ domain-like0.8188Inherited
PX domain0.858Inherited
Protein kinase-like (PK-like)0.9366Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.00003391Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0002152Direct
    52540,48019
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 48019 - post-AAA+ oligomerization domain-like
  • 0.0002152Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0009376Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00106Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00106Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.001438Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.01471Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.03939Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.04403Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.07409Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.07409Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.07544Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.1223Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.1319Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.3565Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.9481Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00106Inherited
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.1223Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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