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Worm Phenotype (WP): embryonic cell organization biogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ + + 3:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ + + 3:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + 2:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ + 2:   organism development variant [WBPhenotype:0000531] <10>(504|576) (504|246|68)
+ + 2:   cell component morphology variant [WBPhenotype:0002089] <19>(81|85) (81|43|9)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ 1:   cell organization biogenesis variant [WBPhenotype:0010002] <6>(39|44) (40|19|4)
+ 1:   embryonic cell physiology variant [WBPhenotype:0000763] <1>(13|17) (13|7|0)
+ 1:   embryonic development variant [WBPhenotype:0000749] <21>(445|531) (445|231|63)
0:   embryonic cell organization biogenesis variant [WBPhenotype:0000764] <6>(13|17) (13|7|0)
- 1:   pronuclear nuclear appearance variant emb [WBPhenotype:0001374] <6>(6|8) (6|4|0)
- 1:   spindle defective early emb [WBPhenotype:0000759] <2>(7|11) (7|5|0)
- 1:   centrosome dynamics variant [WBPhenotype:0002074](0|0) (0|0|0)
- 1:   centrosome pair and associated pronuclear rotation variant [WBPhenotype:0000766](0|0) (0|0|0)
- 1:   cortical blebs present [WBPhenotype:0002007](0|0) (0|0|0)
- 1:   cortical dynamics defective early emb [WBPhenotype:0001044](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
P-loop containing nucleoside triphosphate hydrolases0.00000000000003545Direct
Tubulin C-terminal domain-like0.000000002798Direct
ARM repeat0.000000004238Direct
Tubulin nucleotide-binding domain-like0.00000004491Direct
Prefoldin0.0000001106Direct
POZ domain0.00002345Direct
WD40 repeat-like0.0002799Direct
Nucleic acid-binding proteins0.0003396Direct
TPR-like0.0003868Direct
Cyclin-like0.0006741Direct
"Winged helix" DNA-binding domain0.000844Direct
DNA/RNA polymerases0.002276Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
BTB/POZ domain0.0000000008739Direct
Armadillo repeat0.00000000685Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00000001022Direct
Tubulin, C-terminal domain0.00000001143Direct
Prefoldin0.00000006821Direct
Tubulin, GTPase domain0.000000151Direct
Motor proteins0.0000004244Direct
Extended AAA-ATPase domain0.000001107Direct
DEP domain0.00002854Direct
Pumilio repeat0.000049Direct
Cyclin0.0001091Direct
DNA polymerase I0.0001782Direct
G proteins0.0001784Direct
DnaQ-like 3'-5' exonuclease0.000641Direct
WD40-repeat0.0006642Direct
PDZ domain0.002917Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
P-loop containing nucleoside triphosphate hydrolases0.00000000000002802Direct
Tubulin C-terminal domain-like0.000000002243Direct
ARM repeat0.000000003398Direct
Tubulin nucleotide-binding domain-like0.0000000362Direct
Prefoldin0.0000000893Direct
POZ domain0.00001925Direct
WD40 repeat-like0.0002319Direct
Nucleic acid-binding proteins0.0002817Direct
TPR-like0.000321Direct
Cyclin-like0.0005628Direct
"Winged helix" DNA-binding domain0.0007065Direct
DNA/RNA polymerases0.001923Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.0000000362Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.000007556Direct
    53098,56672
  • 53098 - Ribonuclease H-like
  • 56672 - DNA/RNA polymerases
  • 0.00004128Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.001674Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.003231Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.04167Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)