SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): chromosome segregation variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ + 2:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ 1:   cell homeostasis metabolism variant [WBPhenotype:0000585] <12>(65|61) (65|26|11)
0:   chromosome segregation variant [WBPhenotype:0000773] <6>(11|9) (11|2|0)
- 1:   meiotic chromosome segregation variant [WBPhenotype:0001499] <2>(6|4) (6|1|0)
- 1:   mitotic chromosome segregation variant [WBPhenotype:0001378] <2>(2|3) (2|0|0)
- 1:   aneuploidy [WBPhenotype:0001882] <1>(6|4) (6|1|0)
- 1:   chromosome alignment variant [WBPhenotype:0001584](0|0) (0|0|0)
- 1:   chromosome segregation variant karyomeres early emb [WBPhenotype:0001077](1|1) (1|1|0)
- 1:   sister chromatid segregation defective early emb [WBPhenotype:0000772](2|2) (2|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
The spindle assembly checkpoint protein mad20Direct
Histone-fold0Direct
LEM domain0Direct
Smc hinge domain0.000000002438Direct
Activating enzymes of the ubiquitin-like proteins0.0001476Direct
Skp1 dimerisation domain-like0.0008586Direct
Cyclin-like0.005084Inherited
Nucleic acid-binding proteins0.03697Inherited
POZ domain0.05217Inherited
P-loop containing nucleoside triphosphate hydrolases0.0582Inherited
"Winged helix" DNA-binding domain0.3221Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
LEM domain0Direct
Nucleosome core histones0Direct
Smc hinge domain0Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00000000459Direct
Motor proteins0.00004766Direct
BTB/POZ domain0.0007522Direct
Skp1 dimerisation domain-like0.001062Inherited
Cyclin0.001352Inherited
ABC transporter ATPase domain-like0.01948Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
The spindle assembly checkpoint protein mad20Direct
Histone-fold0Direct
LEM domain0Direct
Smc hinge domain0.000000001953Direct
Activating enzymes of the ubiquitin-like proteins0.0001219Direct
Skp1 dimerisation domain-like0.0007187Direct
Cyclin-like0.004331Inherited
Nucleic acid-binding proteins0.03262Inherited
POZ domain0.0463Inherited
P-loop containing nucleoside triphosphate hydrolases0.05178Inherited
"Winged helix" DNA-binding domain0.3025Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.0004407Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.06517Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)