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Worm Phenotype (WP): neuron development variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ 1:   cell development variant [WBPhenotype:0000529] <17>(128|124) (129|49|15)
0:   neuron development variant [WBPhenotype:0000816] <6>(30|27) (30|10|4)
- 1:   synaptic transmission variant [WBPhenotype:0000584] <7>(4|3) (4|1|0)
- 1:   neurite development variant [WBPhenotype:0000944] <5>(6|8) (6|4|2)
- 1:   neuronal outgrowth variant [WBPhenotype:0000572] <4>(21|17) (21|7|4)
- 1:   chemosensory neuron development variant [WBPhenotype:0000878](0|0) (0|0|0)
- 1:   neuron cell body absent misplaced [WBPhenotype:0001333](1|1) (1|0|0)
- 1:   neuronal ion channel clustering defective [WBPhenotype:0001786](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Immunoglobulin0.00000000125Direct
Sema domain0.0000000149Direct
GTPase activation domain, GAP0.00000001848Direct
Fibronectin type III0.00000001848Direct
Homeodomain-like0.00001528Direct
Concanavalin A-like lectins/glucanases0.00002135Direct
RNA-binding domain, RBD0.00004918Direct
Frizzled cysteine-rich domain0.0006436Direct
Troponin coil-coiled subunits0.0006436Direct
Cadherin-like0.0006998Direct
Tubulin nucleotide-binding domain-like0.002203Inherited
Plexin repeat0.003155Inherited
SAM/Pointed domain0.005223Inherited
Tubulin C-terminal domain-like0.005223Inherited
P-loop containing nucleoside triphosphate hydrolases0.005848Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.0065Inherited
dsRNA-binding domain-like0.0172Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.01911Inherited
HLH, helix-loop-helix DNA-binding domain0.0275Inherited
DBL homology domain (DH-domain)0.02829Inherited
Eukaryotic type KH-domain (KH-domain type I)0.03097Inherited
Nicotinic receptor ligand binding domain-like0.03885Inherited
Cysteine-rich domain0.04424Inherited
Calponin-homology domain, CH-domain0.04984Inherited
BAR/IMD domain-like0.07411Inherited
PH domain-like0.08189Inherited
Protein kinase-like (PK-like)0.08559Inherited
Growth factor receptor domain0.1372Inherited
SMAD/FHA domain0.219Inherited
EGF/Laminin0.3878Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Troponin I0Direct
BCR-homology GTPase activation domain (BH-domain)0.00000003065Direct
Fibronectin type III0.00000004808Direct
Sema domain0.0000008301Direct
Homeodomain0.00000253Direct
I set domains0.000002735Direct
Cadherin0.0001629Direct
Frizzled cysteine-rich domain0.000759Direct
Laminin G-like module0.0008864Direct
Canonical RBD0.0009454Direct
Tandem AAA-ATPase domain0.001484Inherited
Tubulin, GTPase domain0.002784Inherited
Plexin repeat0.003495Inherited
Motor proteins0.003719Inherited
Tubulin, C-terminal domain0.006615Inherited
Pleckstrin-homology domain (PH domain)0.009107Inherited
FHA domain0.01354Inherited
Double-stranded RNA-binding domain (dsRBD)0.03216Inherited
Eukaryotic type KH-domain (KH-domain type I)0.03698Inherited
HLH, helix-loop-helix DNA-binding domain0.03913Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.04118Inherited
Calponin-homology domain, CH-domain0.05946Inherited
Nicotinic receptor ligand binding domain-like0.06283Inherited
Protein kinases, catalytic subunit0.08971Inherited
Growth factor receptor domain0.09615Inherited
PDZ domain0.1366Inherited
G proteins0.2294Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Immunoglobulin0.000000001Direct
Sema domain0.00000001197Direct
GTPase activation domain, GAP0.00000001487Direct
Fibronectin type III0.00000001487Direct
Homeodomain-like0.00001253Direct
Concanavalin A-like lectins/glucanases0.00001752Direct
RNA-binding domain, RBD0.00004051Direct
Frizzled cysteine-rich domain0.0005368Direct
Troponin coil-coiled subunits0.0005368Direct
Cadherin-like0.0005845Direct
Tubulin nucleotide-binding domain-like0.00186Inherited
Plexin repeat0.002673Inherited
SAM/Pointed domain0.004452Inherited
Tubulin C-terminal domain-like0.004452Inherited
P-loop containing nucleoside triphosphate hydrolases0.00499Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.005555Inherited
dsRNA-binding domain-like0.01491Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.01661Inherited
HLH, helix-loop-helix DNA-binding domain0.0241Inherited
DBL homology domain (DH-domain)0.0248Inherited
Eukaryotic type KH-domain (KH-domain type I)0.0272Inherited
Nicotinic receptor ligand binding domain-like0.0343Inherited
Cysteine-rich domain0.03915Inherited
Calponin-homology domain, CH-domain0.04422Inherited
BAR/IMD domain-like0.06639Inherited
PH domain-like0.07356Inherited
Protein kinase-like (PK-like)0.07697Inherited
Growth factor receptor domain0.1252Inherited
SMAD/FHA domain0.2025Inherited
EGF/Laminin0.3673Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.00000005392Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.000003963Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.000006951Direct
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.0005368Direct
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.0005368Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.00186Inherited
    48403,48403
  • 48403 - Ankyrin repeat
  • 48403 - Ankyrin repeat
  • 0.002673Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.009023Inherited
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.01661Inherited
    81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.02331Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    81296,81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.000006951Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.00002849Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.000106Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.0005368Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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