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Worm Phenotype (WP): germ cell differentiation variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ + 2:   cell development variant [WBPhenotype:0000529] <17>(128|124) (129|49|15)
+ 1:   gametogenesis variant [WBPhenotype:0000774] <2>(65|59) (66|27|6)
0:   germ cell differentiation variant [WBPhenotype:0000894] <3>(36|39) (36|15|2)
- 1:   spermatogenesis variant [WBPhenotype:0000670] <8>(1|1) (1|0|0)
- 1:   oogenesis variant [WBPhenotype:0000186] <5>(32|33) (32|14|2)
- 1:   no differentiated gametes [WBPhenotype:0000395] <2>(7|9) (7|3|1)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL equatorial domain-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
GroEL-intermediate domain like0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Skp1 dimerisation domain-like0Direct
14-3-3 protein0Direct
GroEL apical domain-like0.000000000006447Direct
Translation proteins SH3-like domain0.00001116Direct
beta-sandwich domain of Sec23/240.00006203Direct
Ribosomal proteins S24e, L23 and L15e0.0002781Direct
F1F0 ATP synthase subunit C0.0002781Direct
S15/NS1 RNA-binding domain0.0002781Direct
Translation proteins0.0004311Direct
SNARE-like0.0004745Direct
Translational machinery components0.0007527Direct
Sec1/munc18-like (SM) proteins0.0007527Direct
ACP-like0.001591Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.004773Inherited
Nucleic acid-binding proteins0.04833Inherited
Class II aaRS and biotin synthetases0.06645Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.1167Inherited
L30e-like0.1167Inherited
CCCH zinc finger0.2164Inherited
Ribosomal protein S5 domain 2-like0.2194Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.267Inherited
Sm-like ribonucleoproteins0.2825Inherited
Nucleotidylyl transferase0.5681Inherited
Smc hinge domain0.642Inherited
POZ domain0.7781Inherited
PAZ domain0.806Inherited
"Winged helix" DNA-binding domain0.998Inherited
Protein kinase-like (PK-like)1Inherited
Histone-fold1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
beta-sandwich domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
14-3-3 protein0Direct
Trunk domain of Sec23/240Direct
Skp1 dimerisation domain-like6.282e-16Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000000003326Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00004171Direct
Anticodon-binding domain of Class II aaRS0.00009207Direct
Anticodon-binding domain0.00009207Direct
G proteins0.0002636Direct
Translational machinery components0.0003199Direct
F1F0 ATP synthase subunit C0.0004105Direct
Cold shock DNA-binding domain-like0.0005618Direct
Clathrin adaptor core protein0.002349Inherited
Elongation factors0.004014Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.007029Inherited
Nitrogenase iron protein-like0.01544Inherited
Ubiquitin-related0.04641Inherited
Pumilio repeat0.04641Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.07348Inherited
RecA protein-like (ATPase-domain)0.1196Inherited
L30e/L7ae ribosomal proteins0.1914Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.1914Inherited
BTB/POZ domain0.2157Inherited
CCCH zinc finger0.2276Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.2276Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.3182Inherited
Proteasome subunits0.3722Inherited
Cyclin0.4157Inherited
Smc hinge domain0.4415Inherited
Extended AAA-ATPase domain0.4755Inherited
Protein kinases, catalytic subunit1Inherited
Nucleosome core histones1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL-intermediate domain like0Direct
GroEL equatorial domain-like0Direct
14-3-3 protein0Direct
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Skp1 dimerisation domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL apical domain-like0.000000000005124Direct
Translation proteins SH3-like domain0.000009138Direct
beta-sandwich domain of Sec23/240.00005111Direct
S15/NS1 RNA-binding domain0.0002304Direct
F1F0 ATP synthase subunit C0.0002304Direct
Ribosomal proteins S24e, L23 and L15e0.0002304Direct
Translation proteins0.000358Direct
SNARE-like0.0003945Direct
Translational machinery components0.0006294Direct
Sec1/munc18-like (SM) proteins0.0006294Direct
ACP-like0.001338Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00406Inherited
Nucleic acid-binding proteins0.04286Inherited
Class II aaRS and biotin synthetases0.05937Inherited
L30e-like0.1058Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.1058Inherited
CCCH zinc finger0.1999Inherited
Ribosomal protein S5 domain 2-like0.2028Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.2487Inherited
Sm-like ribonucleoproteins0.2638Inherited
Nucleotidylyl transferase0.546Inherited
Smc hinge domain0.6205Inherited
POZ domain0.7586Inherited
PAZ domain0.7871Inherited
"Winged helix" DNA-binding domain0.9879Inherited
Protein kinase-like (PK-like)1Inherited
Histone-fold1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 3.522e-16Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00005111Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0002304Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0009053Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.001295Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.003424Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00406Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.01389Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.1734Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.1734Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00406Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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