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Worm Phenotype (WP): germ cell morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ 1:   cell type morphology variant [WBPhenotype:0002108] <12>(77|76) (79|45|15)
0:   germ cell morphology variant [WBPhenotype:0000900] <4>(44|41) (45|23|8)
- 1:   oocyte morphology variant [WBPhenotype:0001260] <9>(27|30) (27|14|3)
- 1:   germ cell compartment morphology variant [WBPhenotype:0001969] <4>(25|26) (25|10|2)
- 1:   germ cell cytoplasmic morphology variant [WBPhenotype:0001300] <3>(11|8) (11|5|2)
- 1:   sperm morphology variant [WBPhenotype:0000388] <1>(1|0) (1|1|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Sm-like ribonucleoproteins0.00000000000835Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000004566Direct
Actin-like ATPase domain0.00000005811Direct
GroEL-intermediate domain like0.0000000811Direct
GroEL equatorial domain-like0.0000000811Direct
Class II aaRS and biotin synthetases0.000000467Direct
Translation proteins SH3-like domain0.000003305Direct
Ribosomal proteins S24e, L23 and L15e0.00001454Direct
Class II aaRS ABD-related0.00002907Direct
PLC-like phosphodiesterases0.0001062Direct
Annexin0.0001597Direct
ADC-like0.0001597Direct
RBP11-like subunits of RNA polymerase0.0001597Direct
Cdc48 domain 2-like0.0001597Direct
beta-sandwich domain of Sec23/240.0001597Direct
Zn-binding ribosomal proteins0.0002408Direct
dsRNA-binding domain-like0.0003268Direct
Translation proteins0.0003863Direct
Activating enzymes of the ubiquitin-like proteins0.0005726Direct
F1F0 ATP synthase subunit C0.0006954Direct
S15/NS1 RNA-binding domain0.0006954Direct
L30e-like0.001158Inherited
Translational machinery components0.00184Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.003427Inherited
ACP-like0.003821Inherited
Ribosomal protein S5 domain 2-like0.009515Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.01098Inherited
RNA-binding domain, RBD0.01457Inherited
GroEL apical domain-like0.0262Inherited
EF-hand0.03242Inherited
ARM repeat0.0342Inherited
CCCH zinc finger0.06581Inherited
Nucleic acid-binding proteins0.3296Inherited
PDZ domain-like0.557Inherited
PH domain-like0.8485Inherited
Cysteine-rich domain0.9276Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.9468Inherited
SH3-domain0.9872Inherited
Immunoglobulin1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
beta-sandwich domain of Sec23/240Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Mammalian PLC0Direct
Trunk domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Anticodon-binding domain of Class II aaRS0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Proteasome subunits0.0000000002351Direct
Actin/HSP700.000000001719Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000000001975Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000002925Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0000004745Direct
Pumilio repeat0.00002384Direct
RecA protein-like (ATPase-domain)0.0001347Direct
Cdc48 domain 2-like0.000238Direct
Annexin0.000238Direct
Anticodon-binding domain0.000238Direct
Cdc48 N-terminal domain-like0.000238Direct
Cold shock DNA-binding domain-like0.0005303Direct
Translational machinery components0.0009807Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0009807Direct
L30e/L7ae ribosomal proteins0.001033Inherited
F1F0 ATP synthase subunit C0.001033Inherited
Canonical RBD0.01092Inherited
Elongation factors0.01282Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.01618Inherited
Group II chaperonin (CCT, TRIC), apical domain0.02143Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.02418Inherited
Extended AAA-ATPase domain0.04471Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.05068Inherited
CCCH zinc finger0.05548Inherited
G proteins0.09968Inherited
Laminin-type module0.1002Inherited
Nitrogenase iron protein-like0.1002Inherited
Clathrin adaptor core protein0.1661Inherited
PLC-like (P variant)0.1917Inherited
PDZ domain0.581Inherited
Pleckstrin-homology domain (PH domain)0.8604Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal, gelsolin-like domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Sm-like ribonucleoproteins0.000000000006589Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000003653Direct
Actin-like ATPase domain0.00000004651Direct
GroEL equatorial domain-like0.00000006496Direct
GroEL-intermediate domain like0.00000006496Direct
Class II aaRS and biotin synthetases0.0000003762Direct
Translation proteins SH3-like domain0.000002684Direct
Ribosomal proteins S24e, L23 and L15e0.00001184Direct
Class II aaRS ABD-related0.00002373Direct
PLC-like phosphodiesterases0.00008699Direct
Cdc48 domain 2-like0.0001311Direct
Annexin0.0001311Direct
RBP11-like subunits of RNA polymerase0.0001311Direct
beta-sandwich domain of Sec23/240.0001311Direct
ADC-like0.0001311Direct
Zn-binding ribosomal proteins0.0001979Direct
dsRNA-binding domain-like0.0002693Direct
Translation proteins0.0003187Direct
Activating enzymes of the ubiquitin-like proteins0.0004743Direct
F1F0 ATP synthase subunit C0.0005769Direct
S15/NS1 RNA-binding domain0.0005769Direct
L30e-like0.0009646Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0009646Direct
Translational machinery components0.001541Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.002899Inherited
ACP-like0.003237Inherited
Ribosomal protein S5 domain 2-like0.008174Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.009456Inherited
RNA-binding domain, RBD0.01262Inherited
GroEL apical domain-like0.02293Inherited
EF-hand0.02851Inherited
ARM repeat0.0301Inherited
CCCH zinc finger0.05872Inherited
Nucleic acid-binding proteins0.31Inherited
PDZ domain-like0.5352Inherited
PH domain-like0.8314Inherited
Cysteine-rich domain0.9135Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.9334Inherited
SH3-domain0.9762Inherited
Immunoglobulin1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.000000003337Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000006496Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000006496Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0001311Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.0001311Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0004743Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0005769Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0009646Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.003237Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.004351Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.004351Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.009456Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.06368Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.08927Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.9692Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000006496Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0004743Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0009646Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.009456Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.6274Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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