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Worm Phenotype (WP): germ cell morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ 1:   cell type morphology variant [WBPhenotype:0002108] <12>(79|80) (81|44|15)
0:   germ cell morphology variant [WBPhenotype:0000900] <4>(45|41) (46|22|8)
- 1:   oocyte morphology variant [WBPhenotype:0001260] <9>(27|30) (27|13|3)
- 1:   germ cell compartment morphology variant [WBPhenotype:0001969] <4>(25|26) (25|10|2)
- 1:   germ cell cytoplasmic morphology variant [WBPhenotype:0001300] <2>(12|8) (12|5|2)
- 1:   sperm morphology variant [WBPhenotype:0000388] <1>(1|0) (1|1|1)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Sm-like ribonucleoproteins0.000000000007441Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000004102Direct
GroEL equatorial domain-like0.00000007574Direct
GroEL-intermediate domain like0.00000007574Direct
Class II aaRS and biotin synthetases0.0000004291Direct
Translation proteins SH3-like domain0.000003097Direct
Ribosomal proteins S24e, L23 and L15e0.00001395Direct
Class II aaRS ABD-related0.00002772Direct
PLC-like phosphodiesterases0.0001007Direct
RBP11-like subunits of RNA polymerase0.0001546Direct
beta-sandwich domain of Sec23/240.0001546Direct
Cdc48 domain 2-like0.0001546Direct
Annexin0.0001546Direct
ADC-like0.0001546Direct
Zn-binding ribosomal proteins0.0002316Direct
Actin-like ATPase domain0.0003514Direct
Translation proteins0.0003637Direct
dsRNA-binding domain-like0.0005011Direct
Activating enzymes of the ubiquitin-like proteins0.0005525Direct
F1F0 ATP synthase subunit C0.0006732Direct
S15/NS1 RNA-binding domain0.0006732Direct
L30e-like0.001112Inherited
Translational machinery components0.001782Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.003305Inherited
ACP-like0.003708Inherited
RNA-binding domain, RBD0.00865Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.01064Inherited
Ribosomal protein S5 domain 2-like0.01437Inherited
GroEL apical domain-like0.02404Inherited
EF-hand0.02815Inherited
CCCH zinc finger0.0605Inherited
ARM repeat0.07496Inherited
Nucleic acid-binding proteins0.3062Inherited
PDZ domain-like0.5339Inherited
PH domain-like0.8195Inherited
Cysteine-rich domain0.9132Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.9299Inherited
SH3-domain0.9752Inherited
Protein kinase-like (PK-like)1Inherited
Immunoglobulin1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
beta-sandwich domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Mammalian PLC0Direct
Anticodon-binding domain of Class II aaRS0Direct
Trunk domain of Sec23/240Direct
Proteasome subunits0.0000000002187Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000000001848Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000000279Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0000004475Direct
Pumilio repeat0.00002299Direct
RecA protein-like (ATPase-domain)0.0001313Direct
Annexin0.0002334Direct
Cdc48 N-terminal domain-like0.0002334Direct
Anticodon-binding domain0.0002334Direct
Cdc48 domain 2-like0.0002334Direct
Actin/HSP700.0004287Direct
Cold shock DNA-binding domain-like0.0005092Direct
Translational machinery components0.0009576Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0009576Direct
L30e/L7ae ribosomal proteins0.001015Inherited
F1F0 ATP synthase subunit C0.001015Inherited
Canonical RBD0.006013Inherited
Elongation factors0.01253Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.01594Inherited
Group II chaperonin (CCT, TRIC), apical domain0.01926Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.02375Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.04958Inherited
CCCH zinc finger0.04985Inherited
G proteins0.08106Inherited
Extended AAA-ATPase domain0.0884Inherited
Nitrogenase iron protein-like0.09379Inherited
Laminin-type module0.09379Inherited
Clathrin adaptor core protein0.1578Inherited
PLC-like (P variant)0.1794Inherited
PDZ domain0.5564Inherited
Pleckstrin-homology domain (PH domain)0.835Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Sm-like ribonucleoproteins0.000000000005916Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000003306Direct
GroEL-intermediate domain like0.00000006111Direct
GroEL equatorial domain-like0.00000006111Direct
Class II aaRS and biotin synthetases0.0000003478Direct
Translation proteins SH3-like domain0.000002533Direct
Ribosomal proteins S24e, L23 and L15e0.00001143Direct
Class II aaRS ABD-related0.00002277Direct
PLC-like phosphodiesterases0.00008314Direct
beta-sandwich domain of Sec23/240.0001277Direct
RBP11-like subunits of RNA polymerase0.0001277Direct
Annexin0.0001277Direct
ADC-like0.0001277Direct
Cdc48 domain 2-like0.0001277Direct
Zn-binding ribosomal proteins0.0001916Direct
Actin-like ATPase domain0.0002914Direct
Translation proteins0.0003017Direct
dsRNA-binding domain-like0.0004167Direct
Activating enzymes of the ubiquitin-like proteins0.0004599Direct
S15/NS1 RNA-binding domain0.0005619Direct
F1F0 ATP synthase subunit C0.0005619Direct
L30e-like0.0009316Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0009316Direct
Translational machinery components0.0015Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.002801Inherited
ACP-like0.003148Inherited
RNA-binding domain, RBD0.007432Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.009163Inherited
Ribosomal protein S5 domain 2-like0.01242Inherited
GroEL apical domain-like0.021Inherited
EF-hand0.02467Inherited
CCCH zinc finger0.05388Inherited
ARM repeat0.06719Inherited
Nucleic acid-binding proteins0.2867Inherited
PDZ domain-like0.5117Inherited
PH domain-like0.801Inherited
Cysteine-rich domain0.8984Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.916Inherited
SH3-domain0.9634Inherited
Protein kinase-like (PK-like)1Inherited
Immunoglobulin1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000006111Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000006111Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.0001277Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0001277Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.0002914Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0004599Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0005619Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0009316Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.003148Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.004179Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.004179Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.009163Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.08287Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.9575Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000006111Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0004599Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0009316Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.009163Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.6048Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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