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Worm Phenotype (WP): muscle cell morphology variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ 1:   cell type morphology variant [WBPhenotype:0002108] <12>(79|80) (81|44|15)
0:   muscle cell morphology variant [WBPhenotype:0000904] <4>(23|27) (23|16|6)
- 1:   nonstriated muscle morphology variant [WBPhenotype:0000923] <3>(0|0) (0|0|0)
- 1:   striated muscle morphology variant [WBPhenotype:0000924] <2>(20|23) (20|16|5)
- 1:   muscle cell ultrastructure variant [WBPhenotype:0002131](0|0) (0|0|0)
- 1:   myopodia present [WBPhenotype:0001932](2|4) (2|1|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
Calpain large subunit, middle domain (domain III)0.000000466Direct
Troponin coil-coiled subunits0.000000466Direct
Growth factor receptor domain0.000002012Direct
SH2 domain0.000005571Direct
PH domain-like0.00001279Direct
SH3-domain0.00002018Direct
Myosin rod fragments0.00004275Direct
Protein kinase-like (PK-like)0.0001264Direct
Immunoglobulin0.0002729Direct
EGF/Laminin0.0003656Direct
Spectrin repeat0.0003981Direct
Voltage-gated potassium channels0.0008676Direct
Second domain of FERM0.001335Inherited
Tropomyosin0.004412Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.005489Inherited
DBL homology domain (DH-domain)0.00636Inherited
Calponin-homology domain, CH-domain0.008165Inherited
Fibronectin type III0.02202Inherited
Glutathione synthetase ATP-binding domain-like0.04886Inherited
Cysteine-rich domain0.1224Inherited
L domain-like0.3256Inherited
Actin-like ATPase domain0.4048Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
Laminin-type module0.00000004015Direct
Calpain large subunit, middle domain (domain III)0.0000009955Direct
SH2 domain0.00000407Direct
SH3-domain0.00001482Direct
Troponin I0.00001496Direct
Protein kinases, catalytic subunit0.00004235Direct
Calpain large subunit, catalytic domain (domain II)0.00007535Direct
Myosin rod fragments0.00007605Direct
Pleckstrin-homology domain (PH domain)0.0001064Direct
I set domains0.0002428Direct
Spectrin repeat0.0003011Direct
LIM domain0.0003011Direct
Second domain of FERM0.001026Inherited
Growth factor receptor domain0.001278Inherited
Tropomyosin0.003484Inherited
Third domain of FERM0.003484Inherited
DBL homology domain (DH-domain)0.005086Inherited
Calponin-homology domain, CH-domain0.006544Inherited
First domain of FERM0.01164Inherited
EF-hand modules in multidomain proteins0.01164Inherited
Synaptotagmin-like (S variant)0.01477Inherited
Fibronectin type III0.01816Inherited
PLC-like (P variant)0.0372Inherited
Laminin G-like module0.04138Inherited
Lamin A/C globular tail domain0.04138Inherited
Actin/HSP700.3128Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Integrin domains0Direct
Troponin coil-coiled subunits0.0000003778Direct
Calpain large subunit, middle domain (domain III)0.0000003778Direct
Growth factor receptor domain0.000001643Direct
SH2 domain0.000004557Direct
PH domain-like0.00001047Direct
SH3-domain0.00001655Direct
Myosin rod fragments0.00003518Direct
Protein kinase-like (PK-like)0.0001044Direct
Immunoglobulin0.0002261Direct
EGF/Laminin0.0003033Direct
Spectrin repeat0.0003305Direct
Voltage-gated potassium channels0.0007263Direct
Second domain of FERM0.00112Inherited
Tropomyosin0.003752Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.004678Inherited
DBL homology domain (DH-domain)0.005435Inherited
Calponin-homology domain, CH-domain0.007008Inherited
Fibronectin type III0.01921Inherited
Glutathione synthetase ATP-binding domain-like0.04333Inherited
Cysteine-rich domain0.1112Inherited
L domain-like0.3059Inherited
Actin-like ATPase domain0.3835Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54001,49758
  • 54001 - Cysteine proteinases
  • 49758 - Calpain large subunit, middle domain (domain III)
  • 0.00000009941Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.000008053Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00001967Direct
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.0002318Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0002674Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0007622Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.00112Inherited
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.00112Inherited
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.003752Inherited
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.003752Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.005846Inherited
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.01235Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.01235Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.04333Inherited
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.04333Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.3835Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00009663Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.00112Inherited
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00112Inherited
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.003752Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.005053Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.005435Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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