SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): striated muscle morphology variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ + 2:   organ system morphology variant [WBPhenotype:0000534] <9>(98|101) (99|48|16)
+ + 2:   cell type morphology variant [WBPhenotype:0002108] <12>(79|80) (81|44|15)
+ 1:   muscle system morphology variant [WBPhenotype:0000603] <2>(21|23) (21|16|5)
+ 1:   muscle cell morphology variant [WBPhenotype:0000904] <4>(23|27) (23|16|6)
0:   striated muscle morphology variant [WBPhenotype:0000924] <2>(20|23) (20|16|5)
- 1:   body wall muscle morphology variant [WBPhenotype:0000926] <3>(19|21) (19|15|4)
- 1:   male longitudinal muscle morphology variant [WBPhenotype:0000927](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
SH3-domain0.00000000002276Direct
Calponin-homology domain, CH-domain0.00000001712Direct
SH2 domain0.00000005302Direct
Spectrin repeat0.0000001247Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0000001255Direct
Calpain large subunit, middle domain (domain III)0.0000002936Direct
Myosin rod fragments0.00002944Direct
Second domain of FERM0.00008447Direct
Tropomyosin0.00009753Direct
DBL homology domain (DH-domain)0.000121Direct
Voltage-gated potassium channels0.0004368Direct
Cysteine-rich domain0.0006134Direct
Actin-like ATPase domain0.006488Inherited
Glutathione synthetase ATP-binding domain-like0.02018Inherited
Growth factor receptor domain0.9758Inherited
Fibronectin type III1Inherited
Immunoglobulin1Inherited
EGF/Laminin1Inherited
Troponin coil-coiled subunits1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
SH3-domain0.0000000003043Direct
Pleckstrin-homology domain (PH domain)0.0000000006985Direct
Calponin-homology domain, CH-domain0.00000007801Direct
Spectrin repeat0.0000001177Direct
LIM domain0.0000001177Direct
SH2 domain0.0000003947Direct
Calpain large subunit, middle domain (domain III)0.0000006156Direct
Calpain large subunit, catalytic domain (domain II)0.00004787Direct
EF-hand modules in multidomain proteins0.00005044Direct
Myosin rod fragments0.00005164Direct
Third domain of FERM0.00009762Direct
Second domain of FERM0.0001151Direct
First domain of FERM0.0001417Direct
Tropomyosin0.0001692Direct
PLC-like (P variant)0.0001692Direct
DBL homology domain (DH-domain)0.0002408Direct
Lamin A/C globular tail domain0.0009913Direct
Synaptotagmin-like (S variant)0.001227Inherited
Actin/HSP700.001292Inherited
Fibronectin type III1Inherited
Laminin-type module1Inherited
I set domains1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Integrin domains0Direct
SH3-domain0.00000000001812Direct
Calponin-homology domain, CH-domain0.00000001376Direct
SH2 domain0.00000004275Direct
Spectrin repeat0.0000001007Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0000001013Direct
Calpain large subunit, middle domain (domain III)0.0000002377Direct
Myosin rod fragments0.00002419Direct
Second domain of FERM0.00006968Direct
Tropomyosin0.00008048Direct
DBL homology domain (DH-domain)0.00009999Direct
Voltage-gated potassium channels0.0003629Direct
Cysteine-rich domain0.0005114Direct
Actin-like ATPase domain0.005545Inherited
Glutathione synthetase ATP-binding domain-like0.01757Inherited
Growth factor receptor domain0.9641Inherited
EGF/Laminin1Inherited
Immunoglobulin1Inherited
Fibronectin type III1Inherited
Troponin coil-coiled subunits1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.000000001348Direct
    54001,49758
  • 54001 - Cysteine proteinases
  • 49758 - Calpain large subunit, middle domain (domain III)
  • 0.0000000624Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0000000624Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.000005912Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.00001154Direct
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.0001721Direct
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.0001721Direct
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.0001721Direct
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.0001721Direct
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.0002036Direct
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.0002036Direct
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.000326Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.002674Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.9866Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 1Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0000000001209Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.000000009346Direct
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.0001316Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.9394Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 1Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)