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Worm Phenotype (WP): pattern of transgene expression variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(178|190) (182|87|26)
+ + 2:   gene expression variant [WBPhenotype:0000717] <11>(127|139) (131|64|20)
+ 1:   transgene expression variant [WBPhenotype:0000306] <3>(82|99) (85|43|14)
0:   pattern of transgene expression variant [WBPhenotype:0000961] <2>(49|61) (49|29|12)
- 1:   ectopic expression transgene [WBPhenotype:0001276](4|4) (4|1|0)
- 1:   transgene subcellular localization variant [WBPhenotype:0000679](30|44) (30|23|9)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
F1F0 ATP synthase subunit C0Direct
FF domain0Direct
JAB1/MPN domain0Direct
Ribosomal protein L10-like0Direct
Helical domain of Sec23/240Direct
Ribosomal proteins S24e, L23 and L15e0Direct
GroEL-intermediate domain like0Direct
GroEL equatorial domain-like0Direct
MIR domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Class II aaRS ABD-related0Direct
14-3-3 protein0Direct
Cu,Zn superoxide dismutase-like0Direct
Zn-finger domain of Sec23/240Direct
Subdomain of clathrin and coatomer appendage domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Clathrin adaptor appendage domain0Direct
HSP90 C-terminal domain0Direct
Chromo domain-like0.00000000000003037Direct
RING/U-box0.00000000004926Direct
SET domain0.0000000001947Direct
SNARE-like0.00000002836Direct
GroEL apical domain-like0.0000003158Direct
Cysteine proteinases0.0000003667Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.000001558Direct
Hect, E3 ligase catalytic domain0.000001558Direct
Cyclophilin-like0.000002458Direct
Sm-like ribonucleoproteins0.000007067Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0001798Direct
FKBP-like0.0002116Direct
Activating enzymes of the ubiquitin-like proteins0.0002316Direct
P-loop containing nucleoside triphosphate hydrolases0.0002483Direct
Tudor/PWWP/MBT0.0002961Direct
UBC-like0.0006718Direct
L30e-like0.0008126Direct
Chaperone J-domain0.0009128Direct
HIT/MYND zinc finger-like0.0009592Direct
HSP20-like chaperones0.005588Inherited
Tubulin C-terminal domain-like0.01015Inherited
Acid proteases0.01362Inherited
Tubulin nucleotide-binding domain-like0.01362Inherited
B-box zinc-binding domain0.03291Inherited
Heat shock protein 70kD (HSP70), C-terminal subdomain0.07832Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.182Inherited
CCCH zinc finger0.9262Inherited
Homeodomain-like1Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited
p53-like transcription factors1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
PDI-like0Direct
MIR domain0Direct
beta-sandwich domain of Sec23/240Direct
Heat shock protein 90, HSP90, N-terminal domain0Direct
Brix domain0Direct
FF domain0Direct
Hsp90 middle domain0Direct
Cu,Zn superoxide dismutase-like0Direct
Quinoprotein alcohol dehydrogenase-like0Direct
Helical domain of Sec23/240Direct
L30e/L7ae ribosomal proteins0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Ubiquitin carboxyl-terminal hydrolase UCH-L0Direct
14-3-3 protein0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Clathrin coat assembly domain0Direct
Chromo domain0Direct
Trunk domain of Sec23/240Direct
HSP90 C-terminal domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
F1F0 ATP synthase subunit C0Direct
Integrin domains0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Anticodon-binding domain of Class II aaRS0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
UBC-related0.000000000001996Direct
Forkhead DNA-binding domain0.0000000001779Direct
Pepsin-like0.000000002337Direct
Papain-like0.000000007195Direct
RING finger domain, C3HC40.00000001054Direct
Ubiquitin carboxyl-terminal hydrolase, UCH0.00000002626Direct
Hect, E3 ligase catalytic domain0.000004652Direct
Group II chaperonin (CCT, TRIC), apical domain0.000004652Direct
Cyclophilin (peptidylprolyl isomerase)0.00001176Direct
Histone lysine methyltransferases0.00001176Direct
Translational machinery components0.00001957Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.00001957Direct
Clathrin adaptor core protein0.00008195Direct
Extended PAW domain0.0001215Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0001401Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0003392Direct
Armadillo repeat0.0004525Direct
FKBP immunophilin/proline isomerase0.0005068Direct
Chaperone J-domain0.0005706Direct
Nucleosome core histones0.0009802Direct
Ubiquitin activating enzymes (UBA)0.00139Inherited
Adenain-like0.00139Inherited
Tubulin, C-terminal domain0.00712Inherited
Tubulin, GTPase domain0.009736Inherited
B-box zinc-binding domain0.02478Inherited
PHD domain0.03714Inherited
Heat shock protein 70kD (HSP70), C-terminal subdomain0.06216Inherited
HSP200.1137Inherited
N-acetyl transferase, NAT0.1188Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.1534Inherited
RecA protein-like (ATPase-domain)0.2067Inherited
CCCH zinc finger0.8909Inherited
Homeodomain1Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Ribosomal protein L10-like0Direct
F1F0 ATP synthase subunit C0Direct
GroEL equatorial domain-like0Direct
Clathrin adaptor appendage domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
14-3-3 protein0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
HSP90 C-terminal domain0Direct
JAB1/MPN domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Class II aaRS ABD-related0Direct
GroEL-intermediate domain like0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
Helical domain of Sec23/240Direct
FF domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
MIR domain0Direct
Zn-finger domain of Sec23/240Direct
Cu,Zn superoxide dismutase-like0Direct
Chromo domain-like0.00000000000002383Direct
RING/U-box0.00000000003894Direct
SET domain0.0000000001543Direct
SNARE-like0.00000002266Direct
GroEL apical domain-like0.000000254Direct
Cysteine proteinases0.0000002951Direct
Hect, E3 ligase catalytic domain0.000001261Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.000001261Direct
Cyclophilin-like0.000001993Direct
Sm-like ribonucleoproteins0.000005748Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0001476Direct
FKBP-like0.0001739Direct
Activating enzymes of the ubiquitin-like proteins0.0001904Direct
P-loop containing nucleoside triphosphate hydrolases0.0002042Direct
Tudor/PWWP/MBT0.0002439Direct
UBC-like0.0005571Direct
L30e-like0.0006759Direct
Chaperone J-domain0.0007594Direct
HIT/MYND zinc finger-like0.000798Direct
HSP20-like chaperones0.004753Inherited
Tubulin C-terminal domain-like0.00873Inherited
Tubulin nucleotide-binding domain-like0.01178Inherited
Acid proteases0.01178Inherited
B-box zinc-binding domain0.02894Inherited
Heat shock protein 70kD (HSP70), C-terminal subdomain0.07021Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.1672Inherited
CCCH zinc finger0.9119Inherited
Homeodomain-like1Inherited
p53-like transcription factors1Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0Direct
    54495,46934
  • 54495 - UBC-like
  • 46934 - UBA-like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0Direct
    144232,82199
  • 144232 - HIT/MYND zinc finger-like
  • 82199 - SET domain
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0Direct
    81698,81698
  • 81698 - FF domain
  • 81698 - FF domain
  • 0Direct
    57903,51197
  • 57903 - FYVE/PHD zinc finger
  • 51197 - Clavaminate synthase-like
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0Direct
    57903,82199
  • 57903 - FYVE/PHD zinc finger
  • 82199 - SET domain
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.000001261Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.00004559Direct
    52833,52833
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 0.0003569Direct
    57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.002505Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.01178Inherited
    57850,57845
  • 57850 - RING/U-box
  • 57845 - B-box zinc-binding domain
  • 0.09388Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.1672Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.5789Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48452,48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0Direct
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.000001261Direct
    52833,52833,52833
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 0.0005054Direct
    57850,57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.0006759Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.1672Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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