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Worm Phenotype (WP): somatic gonad morphology variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + 3:   organ system morphology variant [WBPhenotype:0000534] <9>(98|101) (99|48|16)
+ + 2:   reproductive system morphology variant [WBPhenotype:0000605] <5>(49|49) (51|18|6)
+ 1:   gonad morphology variant [WBPhenotype:0001355] <10>(29|29) (29|9|2)
0:   somatic gonad morphology variant [WBPhenotype:0000977] <3>(8|8) (8|3|1)
- 1:   gonad arm morphology variant [WBPhenotype:0000188](8|8) (8|3|1)
- 1:   gonad displaced [WBPhenotype:0000667](0|0) (0|0|0)
- 1:   spermatheca morphology variant [WBPhenotype:0001659](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
HMG-box0.002923Inherited
Tubulin C-terminal domain-like0.02365Inherited
Tubulin nucleotide-binding domain-like0.02365Inherited
Nucleic acid-binding proteins0.06681Inherited
GroEL equatorial domain-like0.213Inherited
GroEL-intermediate domain like0.213Inherited
GroEL apical domain-like0.213Inherited
P-loop containing nucleoside triphosphate hydrolases0.5654Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
DNA replication initiator (cdc21/cdc54) N-terminal domain0.000000104Direct
Cyclin0.001447Inherited
HMG-box0.002165Inherited
Laminin-type module0.01895Inherited
Tubulin, C-terminal domain0.01895Inherited
Tubulin, GTPase domain0.01895Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.3226Inherited
Group II chaperonin (CCT, TRIC), apical domain0.3226Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
HMG-box0.002475Inherited
Tubulin C-terminal domain-like0.02066Inherited
Tubulin nucleotide-binding domain-like0.02066Inherited
Nucleic acid-binding proteins0.05969Inherited
GroEL-intermediate domain like0.1967Inherited
GroEL equatorial domain-like0.1967Inherited
GroEL apical domain-like0.1967Inherited
P-loop containing nucleoside triphosphate hydrolases0.5432Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.02066Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1967Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.1967Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.1967Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)