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Worm Phenotype (WP): muscle cell physiology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ 1:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ 1:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
0:   muscle cell physiology variant [WBPhenotype:0000990] <7>(18|20) (19|12|4)
- 1:   muscle cell activity variant [WBPhenotype:0001735] <1>(1|1) (1|0|0)
- 1:   pharyngeal muscle physiology variant [WBPhenotype:0001191] <1>(0|0) (0|0|0)
- 1:   somatic sheath physiology variant [WBPhenotype:0001198] <1>(4|3) (4|3|1)
- 1:   vulval muscle physiology variant [WBPhenotype:0001075] <1>(0|0) (0|0|0)
- 1:   body wall muscle physiology variant [WBPhenotype:0001292](0|0) (0|0|0)
- 1:   muscle cell attachment variant [WBPhenotype:0000716](7|9) (8|8|2)
- 1:   muscle membrane potential variant [WBPhenotype:0002166](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
PH domain-like0.0000000000008061Direct
SH2 domain0.000000000001359Direct
SH3-domain0.00000000006616Direct
PLC-like phosphodiesterases0.000000003127Direct
Second domain of FERM0.000002601Direct
EF-hand0.000005263Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.00002454Direct
Ubiquitin-like0.00009547Direct
Protein kinase-like (PK-like)0.0001058Direct
Spectrin repeat0.0002337Direct
Calponin-homology domain, CH-domain0.0002506Direct
Growth factor receptor domain0.0003802Direct
GTPase activation domain, GAP0.000611Direct
Cysteine-rich domain0.002306Inherited
(Phosphotyrosine protein) phosphatases II0.002625Inherited
Voltage-gated potassium channels0.002758Inherited
DBL homology domain (DH-domain)0.008578Inherited
Actin-like ATPase domain0.02331Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Mammalian PLC0Direct
SH2 domain0.00000000002861Direct
SH3-domain0.000000000135Direct
EF-hand modules in multidomain proteins0.00000001529Direct
Pleckstrin-homology domain (PH domain)0.00000009155Direct
LIM domain0.0000004532Direct
PLC-like (P variant)0.00000105Direct
Second domain of FERM0.000002882Direct
Third domain of FERM0.000003298Direct
First domain of FERM0.000009098Direct
Growth factor receptor domain0.0001006Direct
Spectrin repeat0.0001006Direct
Protein kinases, catalytic subunit0.0001436Direct
Calponin-homology domain, CH-domain0.0002919Direct
Phosphotyrosine-binding domain (PTB)0.0009224Direct
BCR-homology GTPase activation domain (BH-domain)0.0009224Direct
DBL homology domain (DH-domain)0.008782Inherited
I set domains0.008782Inherited
Actin/HSP700.0163Inherited
Voltage-gated potassium channels0.01832Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PH domain-like0.0000000000006389Direct
SH2 domain0.000000000001078Direct
SH3-domain0.00000000005272Direct
PLC-like phosphodiesterases0.000000002507Direct
Second domain of FERM0.000002124Direct
EF-hand0.000004306Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.00002014Direct
Ubiquitin-like0.00007876Direct
Protein kinase-like (PK-like)0.0000874Direct
Spectrin repeat0.0001934Direct
Calponin-homology domain, CH-domain0.0002075Direct
Growth factor receptor domain0.0003155Direct
GTPase activation domain, GAP0.0005094Direct
Cysteine-rich domain0.001949Inherited
(Phosphotyrosine protein) phosphatases II0.002219Inherited
Voltage-gated potassium channels0.002333Inherited
DBL homology domain (DH-domain)0.007369Inherited
BAR/IMD domain-like0.01964Inherited
Actin-like ATPase domain0.02035Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00000002081Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.0000002819Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.0000003318Direct
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.000005415Direct
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.00006167Direct
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.00006167Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0007517Direct
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.001723Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.01641Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00000002371Direct
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.000004568Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0007517Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)