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Worm Phenotype (WP): other abnormality early emb

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ + + + 4:   organism development variant [WBPhenotype:0000531] <10>(504|576) (504|246|68)
+ + + 3:   lethal [WBPhenotype:0000062] <5>(498|574) (498|245|68)
+ + + 3:   embryonic development variant [WBPhenotype:0000749] <21>(445|531) (445|231|63)
+ + 2:   embryonic lethal [WBPhenotype:0000050] <7>(443|531) (443|230|63)
+ 1:   early embryonic lethal [WBPhenotype:0001100] <30>(61|63) (61|26|4)
0:   other abnormality early emb [WBPhenotype:0001007] <2>(11|6) (11|2|1)
- 1:   complex phenotype early emb [WBPhenotype:0001011](0|0) (0|0|0)
- 1:   pleiotropic defects severe early emb [WBPhenotype:0000270](11|6) (11|2|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Zn-binding ribosomal proteins0.00000000000007962Direct
Translation proteins SH3-like domain0.000000000000415Direct
GroEL equatorial domain-like0.000004009Direct
GroEL-intermediate domain like0.000004009Direct
GroEL apical domain-like0.000004009Direct
Nucleotidylyl transferase0.00001584Direct
Class II aaRS and biotin synthetases0.00004352Direct
S15/NS1 RNA-binding domain0.0003919Direct
Translation proteins0.001639Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001654Inherited
Nucleic acid-binding proteins0.003723Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Cold shock DNA-binding domain-like0.0000005961Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.000004161Direct
Group II chaperonin (CCT, TRIC), apical domain0.000004161Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.000004161Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.00004701Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0003613Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Zn-binding ribosomal proteins0.00000000000006298Direct
Translation proteins SH3-like domain0.0000000000003287Direct
GroEL-intermediate domain like0.000003277Direct
GroEL equatorial domain-like0.000003277Direct
GroEL apical domain-like0.000003277Direct
Nucleotidylyl transferase0.00001299Direct
Class II aaRS and biotin synthetases0.00003581Direct
S15/NS1 RNA-binding domain0.0003254Direct
Translation proteins0.001379Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001392Inherited
Nucleic acid-binding proteins0.003161Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000003277Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000003277Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000003277Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)