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Worm Phenotype (WP): organism pathogen response variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <7>(489|563) (489|241|65)
+ + + 3:   organism physiology variant [WBPhenotype:0000576] <10>(357|420) (358|193|57)
+ + 2:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(347|410) (350|191|56)
+ 1:   organism environmental stimulus response variant [WBPhenotype:0000738] <16>(115|103) (118|52|16)
0:   organism pathogen response variant [WBPhenotype:0001012] <9>(24|24) (25|10|3)
- 1:   pathogen resistance increased [WBPhenotype:0001014] <4>(5|4) (5|1|0)
- 1:   pathogen susceptibility increased [WBPhenotype:0001013] <4>(6|5) (6|3|1)
- 1:   pathogen adherence variant [WBPhenotype:0001415] <3>(0|0) (0|0|0)
- 1:   pathogen load variant [WBPhenotype:0001819] <3>(2|0) (2|0|0)
- 1:   innate immune response variant [WBPhenotype:0002164] <2>(10|11) (11|3|1)
- 1:   pathogen infected pharynx variant [WBPhenotype:0001721] <2>(0|0) (0|0|0)
- 1:   pathogen release variant [WBPhenotype:0002172] <1>(1|1) (1|0|0)
- 1:   pathogen avoidance variant [WBPhenotype:0002378](0|0) (0|0|0)
- 1:   pathogen induced gene expression variant [WBPhenotype:0001857](1|1) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
Histone-fold0.00000001563Direct
PLC-like phosphodiesterases0.000008271Direct
PH domain-like0.00007478Direct
DBL homology domain (DH-domain)0.00009273Direct
Cysteine-rich domain0.0003092Direct
Multidrug resistance efflux transporter EmrE0.003997Inherited
Leucine zipper domain0.005831Inherited
Saposin0.00591Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.01536Inherited
WD40 repeat-like0.03695Inherited
Heme-dependent peroxidases0.04604Inherited
(Trans)glycosidases0.05383Inherited
RNA-binding domain, RBD0.07244Inherited
HSP20-like chaperones0.09984Inherited
GroEL-intermediate domain like0.2466Inherited
GroEL apical domain-like0.2466Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.2466Inherited
GroEL equatorial domain-like0.2466Inherited
HLH, helix-loop-helix DNA-binding domain0.4732Inherited
Tubulin C-terminal domain-like0.497Inherited
Protein kinase-like (PK-like)0.5382Inherited
P-loop containing nucleoside triphosphate hydrolases1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
Mammalian PLC0Direct
Nucleosome core histones0.00000000009498Direct
Rhodopsin-like0.0000005463Direct
Pleckstrin-homology domain (PH domain)0.00001277Direct
PLC-like (P variant)0.00002259Direct
DBL homology domain (DH-domain)0.0000728Direct
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.0001611Direct
HSP200.0001645Direct
Erythroid transcription factor GATA-10.0009552Direct
Leucine zipper domain0.004828Inherited
WD40-repeat0.007703Inherited
Myeloperoxidase-like0.03968Inherited
Canonical RBD0.05754Inherited
Armadillo repeat0.08677Inherited
Group II chaperonin (CCT, TRIC), apical domain0.1508Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1508Inherited
Protein kinases, catalytic subunit0.2042Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.2264Inherited
Proteasome subunits0.2264Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.3789Inherited
HLH, helix-loop-helix DNA-binding domain0.4498Inherited
G proteins0.8793Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
Histone-fold0.00000001256Direct
PLC-like phosphodiesterases0.000006763Direct
PH domain-like0.00006161Direct
DBL homology domain (DH-domain)0.0000765Direct
Cysteine-rich domain0.0002563Direct
Multidrug resistance efflux transporter EmrE0.003395Inherited
Leucine zipper domain0.004975Inherited
Saposin0.005043Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.01329Inherited
WD40 repeat-like0.03259Inherited
Heme-dependent peroxidases0.04076Inherited
(Trans)glycosidases0.04778Inherited
RNA-binding domain, RBD0.06483Inherited
HSP20-like chaperones0.09011Inherited
GroEL equatorial domain-like0.2289Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.2289Inherited
GroEL apical domain-like0.2289Inherited
GroEL-intermediate domain like0.2289Inherited
Nucleotidylyl transferase0.4514Inherited
HLH, helix-loop-helix DNA-binding domain0.4514Inherited
Tubulin C-terminal domain-like0.4749Inherited
Protein kinase-like (PK-like)0.5161Inherited
P-loop containing nucleoside triphosphate hydrolases1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    48431,56968
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    56968,48431
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 0Direct
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.0001699Direct
    57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.003455Inherited
    53300,56436
  • 53300 - vWA-like
  • 56436 - C-type lectin-like
  • 0.01328Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.2289Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.2289Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    56968,48431,56968
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.2289Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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