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Worm Phenotype (WP): nuclear appearance variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ 1:   cell component morphology variant [WBPhenotype:0002089] <19>(81|85) (81|43|9)
0:   nuclear appearance variant [WBPhenotype:0001028] <6>(12|14) (12|7|0)
- 1:   pronuclear nuclear appearance variant emb [WBPhenotype:0001374] <6>(6|8) (6|4|0)
- 1:   nuclear envelope organization variant [WBPhenotype:0002037] <4>(0|0) (0|0|0)
- 1:   chromosome morphology variant [WBPhenotype:0001348] <3>(0|0) (0|0|0)
- 1:   nucleolus variant [WBPhenotype:0000722] <1>(0|1) (0|0|0)
- 1:   nuclei enlarged [WBPhenotype:0001567](2|1) (2|1|0)
- 1:   nuclei small [WBPhenotype:0001792](2|1) (2|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleic acid-binding proteins0.000004775Direct
F1F0 ATP synthase subunit C0.00005144Direct
P-loop containing nucleoside triphosphate hydrolases0.0003557Direct
Cyclin-like0.001805Inherited
Tubulin C-terminal domain-like0.004778Inherited
Sm-like ribonucleoproteins0.01154Inherited
Tubulin nucleotide-binding domain-like0.01154Inherited
DNA/RNA polymerases0.01277Inherited
L30e-like0.01277Inherited
Prefoldin0.0441Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.09484Inherited
Nucleotidylyl transferase0.2391Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00000005188Direct
Extended AAA-ATPase domain0.000009979Direct
Translational machinery components0.00004416Direct
F1F0 ATP synthase subunit C0.00008175Direct
Cyclin0.0002733Direct
DNA polymerase I0.0004966Direct
WD40-repeat0.000641Direct
Elongation factors0.0009454Direct
Tubulin, C-terminal domain0.004258Inherited
Tubulin, GTPase domain0.01033Inherited
Pumilio repeat0.01354Inherited
Ubiquitin-related0.03227Inherited
Prefoldin0.03941Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.15Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nucleic acid-binding proteins0.000003905Direct
F1F0 ATP synthase subunit C0.00004238Direct
P-loop containing nucleoside triphosphate hydrolases0.0002951Direct
Cyclin-like0.00152Inherited
Tubulin C-terminal domain-like0.004065Inherited
Sm-like ribonucleoproteins0.009946Inherited
Tubulin nucleotide-binding domain-like0.009946Inherited
L30e-like0.01103Inherited
DNA/RNA polymerases0.01103Inherited
Prefoldin0.03903Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.08549Inherited
Nucleotidylyl transferase0.2217Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000009105Direct
    53098,56672
  • 53098 - Ribonuclease H-like
  • 56672 - DNA/RNA polymerases
  • 0.0001191Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.0002607Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0002694Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0009412Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.009946Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.06732Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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