SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): mitotic spindle defective early emb

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + + + 10:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   morphology variant [WBPhenotype:0000520] <5>(443|524) (443|228|63)
+ + + + + 5:   organelle organization biogenesis variant [WBPhenotype:0001344] <10>(29|29) (30|10|1)
+ + + + + 5:   development variant [WBPhenotype:0000518] <6>(507|580) (507|247|68)
+ + + + + 5:   cell morphology variant [WBPhenotype:0000533] <10>(104|102) (106|54|17)
+ + + + 4:   cell component morphology variant [WBPhenotype:0002089] <18>(82|83) (82|42|9)
+ + + + 4:   lethal [WBPhenotype:0000062] <5>(497|575) (497|246|68)
+ + + + 4:   physiology variant [WBPhenotype:0000519] <15>(509|582) (509|247|68)
+ + + + 4:   organism development variant [WBPhenotype:0000531] <10>(504|578) (504|247|68)
+ + + + 4:   cytoskeleton organization biogenesis variant [WBPhenotype:0001345] <3>(14|14) (14|5|0)
+ + + + 4:   cell physiology variant [WBPhenotype:0000536] <35>(156|154) (158|67|19)
+ + + 3:   embryonic lethal [WBPhenotype:0000050] <7>(443|532) (443|231|63)
+ + + 3:   microtubule organization biogenesis variant [WBPhenotype:0001588] <4>(9|11) (9|5|0)
+ + + 3:   embryonic development variant [WBPhenotype:0000749] <21>(445|532) (445|232|63)
+ + + 3:   embryonic cell physiology variant [WBPhenotype:0000763] <1>(13|17) (13|7|0)
+ + + 3:   cell division variant [WBPhenotype:0000746] <20>(51|53) (51|20|4)
+ + + 3:   cell organization biogenesis variant [WBPhenotype:0010002] <5>(40|43) (41|18|4)
+ + 2:   early embryonic lethal [WBPhenotype:0001100] <31>(53|58) (55|23|4)
+ + 2:   spindle variant [WBPhenotype:0002414] <8>(7|11) (7|5|0)
+ + 2:   embryonic cell organization biogenesis variant [WBPhenotype:0000764] <6>(13|17) (13|7|0)
+ 1:   spindle defective early emb [WBPhenotype:0000759] <2>(7|11) (7|5|0)
0:   mitotic spindle defective early emb [WBPhenotype:0001102] <6>(7|9) (7|4|0)
- 1:   spindle position orientation defective early emb [WBPhenotype:0000761] <4>(4|6) (4|2|0)
- 1:   spindle rotation defective early emb [WBPhenotype:0001107] <2>(0|0) (0|0|0)
- 1:   spindle absent early emb [WBPhenotype:0001103] <1>(0|0) (0|0|0)
- 1:   mitotic spindle asters defective early emb [WBPhenotype:0001867](0|0) (0|0|0)
- 1:   spindle assembly defective early emb [WBPhenotype:0000628](0|2) (2|1|0)
- 1:   spindle elongation integrity defective early emb [WBPhenotype:0000765](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
POZ domain0.0000001258Direct
Tubulin nucleotide-binding domain-like0.000001242Direct
Tubulin C-terminal domain-like0.000001869Direct
TPR-like0.000004374Direct
Prefoldin0.00002992Direct
"Winged helix" DNA-binding domain0.0000688Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
BTB/POZ domain0.0000000000003419Direct
Armadillo repeat0.00000000743Direct
Tubulin, GTPase domain0.000002725Direct
DEP domain0.00000371Direct
Tubulin, C-terminal domain0.000004099Direct
Prefoldin0.00002406Direct
G proteins0.00004288Direct
PDZ domain0.0002021Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
POZ domain0.0000001012Direct
Tubulin nucleotide-binding domain-like0.000001007Direct
Tubulin C-terminal domain-like0.00000152Direct
TPR-like0.000003565Direct
Prefoldin0.00002449Direct
"Winged helix" DNA-binding domain0.0000564Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.000001007Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.0001711Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0005096Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)