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Worm Phenotype (WP): programmed cell death variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ + 2:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ 1:   cell death variant [WBPhenotype:0000729] <3>(56|50) (57|16|5)
0:   programmed cell death variant [WBPhenotype:0001172] <3>(54|47) (55|15|5)
- 1:   apoptosis variant [WBPhenotype:0000730] <13>(50|43) (50|12|5)
- 1:   non apoptotic cell death variant [WBPhenotype:0001173] <2>(12|10) (12|4|1)
- 1:   somatic cell death variant [WBPhenotype:0000965](3|2) (3|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
RBP11-like subunits of RNA polymerase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Clathrin adaptor appendage domain0Direct
DLC0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
VPS9 domain0Direct
PX domain0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
Skp1 dimerisation domain-like0.00000000000005402Direct
FYVE/PHD zinc finger0.000000003007Direct
Cullin homology domain0.00000004868Direct
GroEL apical domain-like0.000000141Direct
PH domain-like0.0000006165Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000000627Direct
GroEL equatorial domain-like0.000001451Direct
Cullin repeat-like0.000001451Direct
GroEL-intermediate domain like0.000001451Direct
ENTH/VHS domain0.000006658Direct
Histone-fold0.00001742Direct
Sm-like ribonucleoproteins0.00006923Direct
Nucleic acid-binding proteins0.00008456Direct
SH3-domain0.00008456Direct
5' to 3' exonuclease, C-terminal subdomain0.00009903Direct
Integrin domains0.00009903Direct
DNA repair protein MutS, domain III0.00009903Direct
BAR/IMD domain-like0.0002994Direct
Activating enzymes of the ubiquitin-like proteins0.0003265Direct
Caspase-like0.0004375Direct
F1F0 ATP synthase subunit C0.0004375Direct
Tubby C-terminal domain-like0.0004375Direct
Cupredoxins0.0004375Direct
DEATH domain0.0006652Direct
WD40 repeat-like0.0008736Direct
SNARE-like0.0008901Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.001172Inherited
Sec1/munc18-like (SM) proteins0.001172Inherited
Lamin A/C globular tail domain0.002013Inherited
SET domain0.002872Inherited
PIN domain-like0.004432Inherited
Hect, E3 ligase catalytic domain0.007211Inherited
Intermediate filament protein, coiled coil region0.01562Inherited
Chromo domain-like0.1079Inherited
POZ domain0.1314Inherited
Saposin0.193Inherited
Protein kinase-like (PK-like)0.3694Inherited
PLP-dependent transferases0.5308Inherited
Metallo-dependent phosphatases0.5462Inherited
"Winged helix" DNA-binding domain0.554Inherited
ARM repeat0.5903Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.6109Inherited
HLH, helix-loop-helix DNA-binding domain0.8109Inherited
Calcium ATPase, transmembrane domain M0.8681Inherited
Metal cation-transporting ATPase, ATP-binding domain N0.8681Inherited
Calcium ATPase, transduction domain A0.8959Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
PX domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Arginine methyltransferase0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Integrin domains0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Cullin repeat0Direct
SCF ubiquitin ligase complex WHB domain0Direct
RNA-polymerase beta0Direct
DLC0Direct
Myotubularin-like phosphatases0Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain6.282e-16Direct
Skp1 dimerisation domain-like0.0000000000002108Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000001034Direct
Cullin homology domain0.0000001371Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000009854Direct
RecA protein-like (ATPase-domain)0.000001461Direct
Nucleosome core histones0.00006134Direct
BTB/POZ domain0.0000991Direct
Ephrin ectodomain0.0001591Direct
Caspase catalytic domain0.0001591Direct
DNA repair protein MutS, domain III0.0001591Direct
5' to 3' exonuclease, C-terminal subdomain0.0001591Direct
5' to 3' exonuclease catalytic domain0.0001591Direct
Cold shock DNA-binding domain-like0.0002439Direct
Clathrin adaptor core protein0.0002556Direct
SH3-domain0.0005413Direct
Ubiquitin activating enzymes (UBA)0.0006991Direct
BAR domain0.0006991Direct
F1F0 ATP synthase subunit C0.0006991Direct
Phosphotyrosine-binding domain (PTB)0.001192Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.001192Inherited
Histone lysine methyltransferases0.001421Inherited
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.001864Inherited
Sec1/munc18-like (SM) proteins0.001864Inherited
Armadillo repeat0.005717Inherited
Translational machinery components0.007021Inherited
Protein kinases, catalytic subunit0.007227Inherited
Hect, E3 ligase catalytic domain0.01138Inherited
Proteasome subunits0.01184Inherited
Intermediate filament protein, coiled coil region0.02445Inherited
ABC transporter ATPase domain-like0.5438Inherited
G proteins0.7672Inherited
HLH, helix-loop-helix DNA-binding domain0.7848Inherited
Calcium ATPase, transduction domain A0.8737Inherited
Phoshoinositide 3-kinase (PI3K), catalytic domain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Subdomain of clathrin and coatomer appendage domain0Direct
PX domain0Direct
VPS9 domain0Direct
Clathrin adaptor appendage domain0Direct
RBP11-like subunits of RNA polymerase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
DLC0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0.00000000000004272Direct
FYVE/PHD zinc finger0.000000002411Direct
Cullin homology domain0.00000003924Direct
GroEL apical domain-like0.0000001138Direct
PH domain-like0.0000005006Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0000005094Direct
GroEL-intermediate domain like0.000001183Direct
GroEL equatorial domain-like0.000001183Direct
Cullin repeat-like0.000001183Direct
ENTH/VHS domain0.000005447Direct
Histone-fold0.00001429Direct
Sm-like ribonucleoproteins0.00005704Direct
Nucleic acid-binding proteins0.00006976Direct
SH3-domain0.00006976Direct
5' to 3' exonuclease, C-terminal subdomain0.00008174Direct
Integrin domains0.00008174Direct
DNA repair protein MutS, domain III0.00008174Direct
BAR/IMD domain-like0.0002483Direct
Activating enzymes of the ubiquitin-like proteins0.0002708Direct
F1F0 ATP synthase subunit C0.0003635Direct
Cupredoxins0.0003635Direct
Tubby C-terminal domain-like0.0003635Direct
Caspase-like0.0003635Direct
DEATH domain0.0005551Direct
WD40 repeat-like0.0007313Direct
SNARE-like0.0007452Direct
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0.0009821Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0009821Direct
Sec1/munc18-like (SM) proteins0.0009821Direct
Lamin A/C globular tail domain0.001697Inherited
SET domain0.002431Inherited
PIN domain-like0.003768Inherited
Hect, E3 ligase catalytic domain0.006176Inherited
Intermediate filament protein, coiled coil region0.01352Inherited
Chromo domain-like0.09758Inherited
POZ domain0.1197Inherited
Saposin0.1775Inherited
Protein kinase-like (PK-like)0.3489Inherited
PLP-dependent transferases0.5086Inherited
Metallo-dependent phosphatases0.5243Inherited
"Winged helix" DNA-binding domain0.5321Inherited
ARM repeat0.568Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.5888Inherited
HLH, helix-loop-helix DNA-binding domain0.7923Inherited
Calcium ATPase, transmembrane domain M0.8517Inherited
Metal cation-transporting ATPase, ATP-binding domain N0.8517Inherited
Calcium ATPase, transduction domain A0.88Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.0000000000001175Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000001183Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000001183Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00008174Direct
    48334,52540
  • 48334 - DNA repair protein MutS, domain III
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00008174Direct
    51905,55424
  • 51905 - FAD/NAD(P)-binding domain
  • 55424 - FAD/NAD-linked reductases, dimerisation (C-terminal) domain
  • 0.0009821Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.009701Inherited
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.03202Inherited
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.8517Inherited
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.9415Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000001183Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.01352Inherited
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.8517Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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