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Worm Phenotype (WP): accumulated germline cell corpses

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + 8:   Variant [WBPhenotype:0000886] <4>
+ + + + + + + 7:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + + + 6:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ + + + + + 6:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ + + + + 5:   cell death variant [WBPhenotype:0000729] <3>(56|50) (57|16|5)
+ + + + 4:   programmed cell death variant [WBPhenotype:0001172] <3>(54|47) (55|15|5)
+ + + 3:   apoptosis variant [WBPhenotype:0000730] <13>(50|43) (50|12|5)
+ + 2:   cell corpse number variant [WBPhenotype:0000590] <2>(29|29) (30|10|5)
+ 1:   accumulated cell corpses [WBPhenotype:0000241] <2>(24|25) (25|10|5)
0:   accumulated germline cell corpses [WBPhenotype:0001180](15|18) (16|9|4)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
DLC0Direct
PX domain0Direct
Skp1 dimerisation domain-like0Direct
Cullin homology domain0.00000000003794Direct
Cullin repeat-like0.000000001281Direct
ENTH/VHS domain0.0000001043Direct
GroEL apical domain-like0.0000002534Direct
Clathrin adaptor appendage domain0.000001788Direct
GroEL equatorial domain-like0.000005379Direct
GroEL-intermediate domain like0.000005379Direct
POZ domain0.000009258Direct
BAR/IMD domain-like0.00001794Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00002424Direct
Sec1/munc18-like (SM) proteins0.00002424Direct
"Winged helix" DNA-binding domain0.0000415Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
PX domain0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Skp1 dimerisation domain-like0Direct
Cullin repeat0Direct
SCF ubiquitin ligase complex WHB domain0Direct
DLC0Direct
Cullin homology domain0.0000000001267Direct
BTB/POZ domain0.0000000006814Direct
Group II chaperonin (CCT, TRIC), apical domain0.000000279Direct
RecA protein-like (ATPase-domain)0.0000006267Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.000005333Direct
Ubiquitin activating enzymes (UBA)0.00001481Direct
BAR domain0.00001481Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0000423Direct
Sec1/munc18-like (SM) proteins0.0000423Direct
Clathrin adaptor core protein0.00009396Direct
Phosphotyrosine-binding domain (PTB)0.00009964Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0.0003088Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PX domain0Direct
Skp1 dimerisation domain-like0Direct
DLC0Direct
Cullin homology domain0.00000000003021Direct
Cullin repeat-like0.000000001025Direct
ENTH/VHS domain0.00000008413Direct
GroEL apical domain-like0.0000002051Direct
Clathrin adaptor appendage domain0.00000146Direct
GroEL-intermediate domain like0.000004401Direct
GroEL equatorial domain-like0.000004401Direct
POZ domain0.000007578Direct
BAR/IMD domain-like0.00001472Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.00001989Direct
Sec1/munc18-like (SM) proteins0.00001989Direct
"Winged helix" DNA-binding domain0.00003415Direct
SNARE-like0.0009747Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000004401Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000004401Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.000006927Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00002441Direct
    57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.0009747Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000004401Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.0003578Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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