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Worm Phenotype (WP): transgene expression increased

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + 8:   Variant [WBPhenotype:0000886] <4>
+ + + + + + + 7:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + + + 6:   organism physiology variant [WBPhenotype:0000576] <10>(355|415) (355|191|56)
+ + + + + 5:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(346|406) (348|189|55)
+ + + + 4:   organism metabolism processing variant [WBPhenotype:0000027] <25>(171|182) (175|80|24)
+ + + 3:   gene expression variant [WBPhenotype:0000717] <10>(122|134) (127|61|19)
+ + 2:   transgene expression variant [WBPhenotype:0000306] <3>(84|95) (88|41|13)
+ 1:   level of transgene expression variant [WBPhenotype:0000962] <2>(35|44) (38|13|6)
0:   transgene expression increased [WBPhenotype:0001236](15|22) (18|9|4)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
TK C-terminal domain-like0Direct
GroEL equatorial domain-like0Direct
HSP90 C-terminal domain0Direct
Heme-dependent catalase-like0Direct
GroEL-intermediate domain like0Direct
ValRS/IleRS/LeuRS editing domain0Direct
GroEL apical domain-like0.00000000007499Direct
Nucleotidylyl transferase0.0000001547Direct
Single hybrid motif0.000001236Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000001236Direct
Class II aaRS ABD-related0.00002946Direct
S-adenosylmethionine synthetase0.0001611Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0001793Direct
4Fe-4S ferredoxins0.0007007Direct
S15/NS1 RNA-binding domain0.0007007Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
a tRNA synthase domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain0Direct
ValRS/IleRS/LeuRS editing domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
Heat shock protein 90, HSP90, N-terminal domain0Direct
Hsp90 middle domain0Direct
Heme-dependent catalases0Direct
Anticodon-binding domain of Class II aaRS0Direct
HSP90 C-terminal domain0Direct
CAT-like0Direct
Group II chaperonin (CCT, TRIC), apical domain0.000000003152Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.0000005029Direct
Biotinyl/lipoyl-carrier proteins and domains0.000003583Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0000248Direct
RecA protein-like (ATPase-domain)0.0001388Direct
PDI-like0.0001388Direct
Biotin dependent carboxylase carboxyltransferase domain0.000244Direct
S-adenosylmethionine synthetase0.000244Direct
MIF4G domain-like0.000244Direct
Anticodon-binding domain0.000244Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0003625Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL-intermediate domain like0Direct
TK C-terminal domain-like0Direct
ValRS/IleRS/LeuRS editing domain0Direct
GroEL equatorial domain-like0Direct
Heme-dependent catalase-like0Direct
HSP90 C-terminal domain0Direct
GroEL apical domain-like0.00000000005977Direct
Nucleotidylyl transferase0.0000001251Direct
Single hybrid motif0.000001007Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000001007Direct
Class II aaRS ABD-related0.00002421Direct
S-adenosylmethionine synthetase0.0001331Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0001482Direct
4Fe-4S ferredoxins0.0005853Direct
S15/NS1 RNA-binding domain0.0005853Direct
Thiamin diphosphate-binding fold (THDP-binding)0.0009778Direct
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.0009778Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0009778Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    50677,52374
  • 50677 - ValRS/IleRS/LeuRS editing domain
  • 52374 - Nucleotidylyl transferase
  • 0Direct
    52518,52922
  • 52518 - Thiamin diphosphate-binding fold (THDP-binding)
  • 52922 - TK C-terminal domain-like
  • 0Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.0001331Direct
    55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.0001331Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0004831Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0005853Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0009778Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    55973,55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.0001331Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0004831Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0009778Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)