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Worm Phenotype (WP): oocyte morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ + 2:   cell type morphology variant [WBPhenotype:0002108] <12>(77|76) (79|45|15)
+ 1:   germ cell morphology variant [WBPhenotype:0000900] <4>(44|41) (45|23|8)
0:   oocyte morphology variant [WBPhenotype:0001260] <9>(27|30) (27|14|3)
- 1:   endomitotic oocytes [WBPhenotype:0000668](6|4) (6|3|1)
- 1:   giant oocytes [WBPhenotype:0000405](0|0) (0|0|0)
- 1:   multiple nuclei oocyte [WBPhenotype:0001955](0|1) (0|0|0)
- 1:   oocyte accumulation [WBPhenotype:0001668](0|0) (0|0|0)
- 1:   oocyte number decreased [WBPhenotype:0001944](8|7) (8|3|1)
- 1:   oocytes disorganized [WBPhenotype:0001925](1|1) (1|1|0)
- 1:   oocytes lack nucleus [WBPhenotype:0001956](2|2) (2|1|0)
- 1:   oocytes small [WBPhenotype:0001945](3|5) (3|3|1)
- 1:   oocytes stacked [WBPhenotype:0001924](0|1) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0.000000000995Direct
GroEL equatorial domain-like0.000000000995Direct
GroEL apical domain-like0.000000004707Direct
PLC-like phosphodiesterases0.000002865Direct
beta-sandwich domain of Sec23/240.00001825Direct
F1F0 ATP synthase subunit C0.00008393Direct
S15/NS1 RNA-binding domain0.00008393Direct
L30e-like0.00009011Direct
Translational machinery components0.0002328Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0002902Direct
ACP-like0.000503Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.001578Inherited
Translation proteins SH3-like domain0.04226Inherited
Nucleic acid-binding proteins0.05153Inherited
Ribosomal proteins S24e, L23 and L15e0.1852Inherited
RNA-binding domain, RBD0.244Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.4111Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.7132Inherited
PH domain-like0.761Inherited
EF-hand0.8679Inherited
PDZ domain-like0.9132Inherited
SH3-domain0.9778Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
beta-sandwich domain of Sec23/240Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Mammalian PLC0Direct
Trunk domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000000003913Direct
Group II chaperonin (CCT, TRIC), apical domain0.000000003301Direct
Pumilio repeat0.0000006442Direct
RecA protein-like (ATPase-domain)0.000009896Direct
Anticodon-binding domain0.00002885Direct
PLC-like (P variant)0.00003541Direct
Translational machinery components0.00007962Direct
L30e/L7ae ribosomal proteins0.000132Direct
F1F0 ATP synthase subunit C0.000132Direct
Clathrin adaptor core protein0.0007872Direct
Elongation factors0.000895Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.002455Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.003817Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.00621Inherited
Cold shock DNA-binding domain-like0.1379Inherited
G proteins0.1565Inherited
Nitrogenase iron protein-like0.1745Inherited
Canonical RBD0.2169Inherited
Proteasome subunits0.3543Inherited
Pleckstrin-homology domain (PH domain)0.5564Inherited
PDZ domain0.63Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal, gelsolin-like domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
GroEL equatorial domain-like0.00000000079Direct
GroEL-intermediate domain like0.00000000079Direct
GroEL apical domain-like0.000000003749Direct
PLC-like phosphodiesterases0.000002324Direct
beta-sandwich domain of Sec23/240.00001488Direct
F1F0 ATP synthase subunit C0.00006872Direct
S15/NS1 RNA-binding domain0.00006872Direct
L30e-like0.00007381Direct
Translational machinery components0.0001914Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000239Direct
ACP-like0.0004165Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.001319Inherited
Translation proteins SH3-like domain0.0373Inherited
Nucleic acid-binding proteins0.04571Inherited
Ribosomal proteins S24e, L23 and L15e0.1702Inherited
RNA-binding domain, RBD0.2264Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.3903Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.6926Inherited
PH domain-like0.7417Inherited
EF-hand0.8518Inherited
PDZ domain-like0.8981Inherited
SH3-domain0.966Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000000079Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000000079Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00001488Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.00006872Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0002489Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.0004165Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.001319Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.1032Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000000079Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.001319Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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