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Worm Phenotype (WP): vulval cell induction variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + + 4:   organ system development variant [WBPhenotype:0000530] <10>(79|72) (80|33|13)
+ + + 3:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ + + 3:   reproductive system development variant [WBPhenotype:0000624] <10>(48|41) (49|22|9)
+ + 2:   vulva development variant [WBPhenotype:0000699] <3>(15|13) (15|3|1)
+ + 2:   cell fate specification variant [WBPhenotype:0000216] <7>(20|18) (20|6|1)
+ 1:   vulva cell fate specification variant [WBPhenotype:0000220] <2>(12|12) (12|3|1)
0:   vulval cell induction variant [WBPhenotype:0001272] <4>(11|11) (11|3|1)
- 1:   vulval cell induction increased [WBPhenotype:0000218] <1>(10|8) (10|2|1)
- 1:   vulval cell induction reduced [WBPhenotype:0000219] <1>(3|2) (3|0|0)
- 1:   adoption of fused vulval cell fate [WBPhenotype:0001680](0|0) (0|0|0)
- 1:   gonad independent vulva differentiation [WBPhenotype:0002027](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Sm-like ribonucleoproteins0.000000000005969Direct
FYVE/PHD zinc finger0.00000001141Direct
Bromodomain0.00000006876Direct
E2F-DP heterodimerization region0.0000009923Direct
Chromo domain-like0.00001447Direct
RNA-binding domain, RBD0.00005254Direct
SET domain0.0004024Direct
Homeodomain-like0.0006496Direct
HIT/MYND zinc finger-like0.0006756Direct
HMG-box0.001815Inherited
WD40 repeat-like0.00195Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000000001351Direct
Bromodomain0.0000002122Direct
Cell cycle transcription factor e2f-dp0.00000169Direct
PHD domain0.000003167Direct
Histone lysine methyltransferases0.00001247Direct
Pumilio repeat0.0002738Direct
PDZ domain0.0005675Direct
TBP-associated factors, TAFs0.0005994Direct
Chromo domain0.000835Direct
WD40-repeat0.002254Inherited
Homeodomain0.005533Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Sm-like ribonucleoproteins0.00000000000471Direct
FYVE/PHD zinc finger0.0000000091Direct
Bromodomain0.00000005503Direct
E2F-DP heterodimerization region0.0000008017Direct
Chromo domain-like0.00001179Direct
RNA-binding domain, RBD0.00004299Direct
SET domain0.0003321Direct
Homeodomain-like0.0005385Direct
HIT/MYND zinc finger-like0.0005603Direct
HMG-box0.001519Inherited
WD40 repeat-like0.001635Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.00002474Direct
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.0004125Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0007423Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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