SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): germ cell cytoplasmic morphology variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + 2:   cell type morphology variant [WBPhenotype:0002108] <12>(79|80) (81|44|15)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ 1:   cell component morphology variant [WBPhenotype:0002089] <19>(81|85) (81|43|9)
+ 1:   germ cell morphology variant [WBPhenotype:0000900] <4>(45|41) (46|22|8)
0:   germ cell cytoplasmic morphology variant [WBPhenotype:0001300] <2>(12|8) (12|5|2)
- 1:   P granule defective [WBPhenotype:0001301] <2>(5|3) (5|1|0)
- 1:   cytoplasmic processing body variant [WBPhenotype:0001794](7|5) (7|4|2)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Sm-like ribonucleoproteins0.000000006572Direct
Cdc48 domain 2-like0.00000166Direct
ADC-like0.00000166Direct
CCCH zinc finger0.0001598Direct
Zn-binding ribosomal proteins0.001495Inherited
Class II aaRS ABD-related0.005947Inherited
Class II aaRS and biotin synthetases0.007145Inherited
ARM repeat0.02245Inherited
dsRNA-binding domain-like0.02799Inherited
RNA-binding domain, RBD0.03288Inherited
Nucleic acid-binding proteins0.0354Inherited
Protein kinase-like (PK-like)0.952Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000008339Direct
Cdc48 N-terminal domain-like0.000002276Direct
Cdc48 domain 2-like0.000002276Direct
CCCH zinc finger0.0001062Direct
Cold shock DNA-binding domain-like0.0005276Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.005233Inherited
Canonical RBD0.08018Inherited
Actin/HSP700.09861Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Sm-like ribonucleoproteins0.000000005274Direct
ADC-like0.000001354Direct
Cdc48 domain 2-like0.000001354Direct
CCCH zinc finger0.000132Direct
Zn-binding ribosomal proteins0.001256Inherited
Class II aaRS ABD-related0.005076Inherited
Class II aaRS and biotin synthetases0.006118Inherited
ARM repeat0.01959Inherited
dsRNA-binding domain-like0.02453Inherited
RNA-binding domain, RBD0.02892Inherited
Nucleic acid-binding proteins0.03121Inherited
Protein kinase-like (PK-like)0.9387Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.000008658Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.02051Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.1653Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)