SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): hermaphrodite reproductive system morphology variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + 2:   organ system morphology variant [WBPhenotype:0000534] <9>(98|101) (99|48|16)
+ 1:   reproductive system morphology variant [WBPhenotype:0000605] <5>(49|49) (51|18|6)
0:   hermaphrodite reproductive system morphology variant [WBPhenotype:0001335] <3>(22|22) (25|8|2)
- 1:   vulva morphology variant [WBPhenotype:0000695] <5>(22|22) (25|8|2)
- 1:   uterus morphology variant [WBPhenotype:0000289] <1>(0|0) (0|0|0)
- 1:   hermaphrodite sex muscle morphology variant [WBPhenotype:0001334](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Nop domain0Direct
Prefoldin0.00001353Direct
Multidrug efflux transporter AcrB transmembrane domain0.00002518Direct
S-adenosylmethionine synthetase0.00009498Direct
GINS helical bundle-like0.00009498Direct
Subtilisin-like0.0004206Direct
Smc hinge domain0.001126Inherited
TAZ domain0.001126Inherited
beta-beta-alpha zinc fingers0.00174Inherited
RNA-binding domain, RBD0.00434Inherited
Histone-fold0.0131Inherited
HMG-box0.04126Inherited
Activating enzymes of the ubiquitin-like proteins0.1932Inherited
Nucleotide-diphospho-sugar transferases0.3478Inherited
"Winged helix" DNA-binding domain0.384Inherited
GroEL equatorial domain-like0.4681Inherited
GroEL-intermediate domain like0.4681Inherited
GroEL apical domain-like0.4681Inherited
WD40 repeat-like0.5595Inherited
Ribosomal proteins S24e, L23 and L15e0.5673Inherited
ARM repeat0.8981Inherited
NAD(P)-binding Rossmann-fold domains1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Nop domain0Direct
Multidrug efflux transporter AcrB transmembrane domain0.00004988Direct
Proprotein convertase P-domain0.0001485Direct
S-adenosylmethionine synthetase0.0001485Direct
Prefoldin0.0002353Direct
Forkhead DNA-binding domain0.0005596Direct
Subtilases0.0006541Direct
Smc hinge domain0.0006541Direct
Tandem AAA-ATPase domain0.006013Inherited
Canonical RBD0.007188Inherited
Nucleosome core histones0.0303Inherited
HMG-box0.03651Inherited
Chromo domain0.04143Inherited
I set domains0.05448Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.2475Inherited
Group II chaperonin (CCT, TRIC), apical domain0.2475Inherited
Group II chaperonin (CCT, TRIC), intermediate domain0.2598Inherited
Ubiquitin activating enzymes (UBA)0.2598Inherited
MIF4G domain-like0.2598Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.4292Inherited
WD40-repeat0.5164Inherited
Actin/HSP700.7054Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nop domain0Direct
Prefoldin0.00001108Direct
Multidrug efflux transporter AcrB transmembrane domain0.00002067Direct
GINS helical bundle-like0.00007836Direct
S-adenosylmethionine synthetase0.00007836Direct
Subtilisin-like0.0003494Direct
Chromo domain-like0.0009411Direct
TAZ domain0.0009437Direct
Smc hinge domain0.0009437Direct
Growth factor receptor domain0.0009856Direct
beta-beta-alpha zinc fingers0.001464Inherited
RNA-binding domain, RBD0.003692Inherited
Histone-fold0.01132Inherited
HMG-box0.03649Inherited
Activating enzymes of the ubiquitin-like proteins0.1777Inherited
Nucleotide-diphospho-sugar transferases0.3276Inherited
"Winged helix" DNA-binding domain0.3635Inherited
GroEL-intermediate domain like0.4466Inherited
GroEL equatorial domain-like0.4466Inherited
GroEL apical domain-like0.4466Inherited
WD40 repeat-like0.5375Inherited
Ribosomal proteins S24e, L23 and L15e0.5451Inherited
ARM repeat0.8826Inherited
Nucleic acid-binding proteins0.9924Inherited
NAD(P)-binding Rossmann-fold domains1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0.00007836Direct
    52743,49785
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0.00007836Direct
    55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.00007836Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0.0001062Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.08119Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.4466Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.4466Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.5433Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    55973,55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.00007836Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.4466Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)