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Worm Phenotype (WP): organelle organization biogenesis variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ + 2:   cell component morphology variant [WBPhenotype:0002089] <19>(81|85) (81|43|9)
+ 1:   cell organization biogenesis variant [WBPhenotype:0010002] <6>(39|44) (40|19|4)
0:   organelle organization biogenesis variant [WBPhenotype:0001344] <13>(22|26) (23|7|1)
- 1:   fat associated bodies variant [WBPhenotype:0001901] <4>(2|1) (2|0|0)
- 1:   nuclear positioning variant [WBPhenotype:0000511] <4>(12|14) (13|5|1)
- 1:   centrosome biogenesis variant [WBPhenotype:0001903] <3>(0|1) (0|0|0)
- 1:   cytoskeleton organization biogenesis variant [WBPhenotype:0001345] <2>(7|7) (7|2|0)
- 1:   mitochondrial content variant [WBPhenotype:0002266] <2>(0|1) (0|0|0)
- 1:   endocytic recycling compartment organization and biogenesis defective [WBPhenotype:0002237](0|0) (0|0|0)
- 1:   endosome biogenesis variant [WBPhenotype:0001803](0|0) (0|0|0)
- 1:   fibrous body-membranous organelle (FB-MO) assembly variant [WBPhenotype:0002386](0|0) (0|0|0)
- 1:   lysosome-related organelle biogenesis variant [WBPhenotype:0002265](0|0) (0|0|0)
- 1:   organelle fusion defective [WBPhenotype:0001809](0|0) (0|0|0)
- 1:   spindle orientation defective early emb [WBPhenotype:0000760](1|1) (1|0|0)
- 1:   spindle orientation variant [WBPhenotype:0001681](2|2) (2|1|0)
- 1:   spindle orientation variant AB or P1 early emb [WBPhenotype:0001106](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Heme-dependent catalase-like0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
beta-sandwich domain of Sec23/240.00001345Direct
PDZ domain-like0.02572Inherited
Transducin (alpha subunit), insertion domain0.03306Inherited
GroEL equatorial domain-like0.04015Inherited
GroEL-intermediate domain like0.04015Inherited
GroEL apical domain-like0.04015Inherited
SNARE-like0.0974Inherited
Actin-like ATPase domain0.1412Inherited
Tubulin nucleotide-binding domain-like0.1412Inherited
Class II aaRS and biotin synthetases0.1499Inherited
Calponin-homology domain, CH-domain0.199Inherited
SH3-domain0.2212Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.2293Inherited
Tubulin C-terminal domain-like0.2909Inherited
PH domain-like0.3554Inherited
Nucleic acid-binding proteins0.3638Inherited
"Winged helix" DNA-binding domain0.4402Inherited
NAD(P)-binding Rossmann-fold domains0.6636Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Heme-dependent catalases0Direct
Trunk domain of Sec23/240Direct
Pumilio repeat0.0000003869Direct
G proteins0.0006784Direct
Phosphotyrosine-binding domain (PTB)0.0009262Direct
Protein kinases, catalytic subunit0.03113Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.03416Inherited
PDZ domain0.03416Inherited
Group II chaperonin (CCT, TRIC), apical domain0.03416Inherited
Transducin (alpha subunit), insertion domain0.05047Inherited
Tubulin, GTPase domain0.1252Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.1331Inherited
Actin/HSP700.1791Inherited
Calponin-homology domain, CH-domain0.1791Inherited
SH3-domain0.2007Inherited
Group II chaperonin (CCT, TRIC), intermediate domain0.2082Inherited
Tubulin, C-terminal domain0.2674Inherited
Motor proteins0.3466Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.4685Inherited
Armadillo repeat0.7396Inherited
WD40-repeat0.7814Inherited
Extended AAA-ATPase domain0.9669Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
beta-sandwich domain of Sec23/240.00001102Direct
PDZ domain-like0.02249Inherited
Transducin (alpha subunit), insertion domain0.02908Inherited
GroEL-intermediate domain like0.03549Inherited
GroEL equatorial domain-like0.03549Inherited
GroEL apical domain-like0.03549Inherited
SNARE-like0.08785Inherited
Actin-like ATPase domain0.1289Inherited
Tubulin nucleotide-binding domain-like0.1289Inherited
Class II aaRS and biotin synthetases0.1371Inherited
Calponin-homology domain, CH-domain0.1833Inherited
SH3-domain0.2045Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.2123Inherited
Tubulin C-terminal domain-like0.272Inherited
PH domain-like0.3351Inherited
Nucleic acid-binding proteins0.3435Inherited
"Winged helix" DNA-binding domain0.4188Inherited
Sm-like ribonucleoproteins0.4724Inherited
NAD(P)-binding Rossmann-fold domains0.6424Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.02908Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.03549Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.03549Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.1289Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.1289Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.03549Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)