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Worm Phenotype (WP): cytoskeleton organization biogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + + 4:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ + + 3:   cell component morphology variant [WBPhenotype:0002089] <17>(84|85) (84|42|9)
+ + 2:   cell organization biogenesis variant [WBPhenotype:0010002] <5>(40|43) (41|18|4)
+ 1:   organelle organization biogenesis variant [WBPhenotype:0001344] <10>(30|29) (31|10|1)
0:   cytoskeleton organization biogenesis variant [WBPhenotype:0001345] <2>(14|14) (14|5|0)
- 1:   actin organization biogenesis variant [WBPhenotype:0001587] <4>(5|4) (5|0|0)
- 1:   microtubule organization biogenesis variant [WBPhenotype:0001588] <4>(9|11) (9|5|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
Tubulin nucleotide-binding domain-like0.00000001242Direct
Tubulin C-terminal domain-like0.00000002278Direct
Prefoldin0.0001127Direct
POZ domain0.0001688Direct
Spectrin repeat0.0004675Direct
TPR-like0.005485Inherited
PDZ domain-like0.005956Inherited
SH3-domain0.005956Inherited
"Winged helix" DNA-binding domain0.01638Inherited
Calponin-homology domain, CH-domain0.02052Inherited
P-loop containing nucleoside triphosphate hydrolases0.0436Inherited
ARM repeat0.2966Inherited
PH domain-like0.4564Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
Motor proteins0.0000000004953Direct
Tubulin, GTPase domain0.00000004537Direct
Tubulin, C-terminal domain0.00000008267Direct
Armadillo repeat0.00000009027Direct
PDZ domain0.000002004Direct
DEP domain0.00001546Direct
BTB/POZ domain0.0000162Direct
Prefoldin0.00009809Direct
Spectrin repeat0.0005126Direct
SH3-domain0.005142Inherited
Calponin-homology domain, CH-domain0.01796Inherited
Extended AAA-ATPase domain0.1069Inherited
G proteins0.4585Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
Tubulin nucleotide-binding domain-like0.000000009907Direct
Tubulin C-terminal domain-like0.00000001819Direct
Prefoldin0.00009239Direct
POZ domain0.0001386Direct
Spectrin repeat0.0003866Direct
TPR-like0.004664Inherited
SH3-domain0.005071Inherited
PDZ domain-like0.005071Inherited
"Winged helix" DNA-binding domain0.01421Inherited
Calponin-homology domain, CH-domain0.01786Inherited
P-loop containing nucleoside triphosphate hydrolases0.0385Inherited
ARM repeat0.2776Inherited
PH domain-like0.4353Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.000000009907Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0001322Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.0008082Direct
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.06181Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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