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Worm Phenotype (WP): gonad morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + 2:   organ system morphology variant [WBPhenotype:0000534] <9>(98|101) (99|48|16)
+ 1:   reproductive system morphology variant [WBPhenotype:0000605] <5>(49|49) (51|18|6)
0:   gonad morphology variant [WBPhenotype:0001355] <10>(29|29) (29|9|2)
- 1:   rachis morphology variant [WBPhenotype:0001940] <4>(15|14) (15|6|2)
- 1:   somatic gonad morphology variant [WBPhenotype:0000977] <3>(8|8) (8|3|1)
- 1:   diakinesis region organization variant [WBPhenotype:0001949](1|3) (1|0|0)
- 1:   diplotene region organization variant [WBPhenotype:0001950](2|6) (2|2|0)
- 1:   gonad degenerate [WBPhenotype:0001958](0|0) (0|0|0)
- 1:   gonad small [WBPhenotype:0001957](1|1) (1|0|0)
- 1:   gonad vesiculated [WBPhenotype:0001979](5|4) (5|1|1)
- 1:   male gonad morphology variant [WBPhenotype:0001357](0|0) (0|0|0)
- 1:   pachytene region organization variant [WBPhenotype:0001951](9|11) (9|4|1)
- 1:   rudimentary gonad [WBPhenotype:0001825](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL equatorial domain-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0Direct
14-3-3 protein0Direct
GroEL apical domain-like0.000000000002475Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0000001025Direct
Sm-like ribonucleoproteins0.000001089Direct
RBP11-like subunits of RNA polymerase0.00004274Direct
Class II aaRS ABD-related0.0001196Direct
S15/NS1 RNA-binding domain0.0001933Direct
L30e-like0.0002483Direct
Smc hinge domain0.0005279Direct
Translational machinery components0.0005279Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0007776Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.003427Inherited
Class II aaRS and biotin synthetases0.007638Inherited
Translation proteins0.01377Inherited
Nucleic acid-binding proteins0.01588Inherited
Translation proteins SH3-like domain0.09201Inherited
Cysteine-rich domain0.1456Inherited
P-loop containing nucleoside triphosphate hydrolases0.1668Inherited
HMG-box0.2012Inherited
Tubulin C-terminal domain-like0.2262Inherited
Tubulin nucleotide-binding domain-like0.2262Inherited
Ribosomal proteins S24e, L23 and L15e0.3404Inherited
"Winged helix" DNA-binding domain0.4987Inherited
Protein kinase-like (PK-like)1Inherited
Histone-fold1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
14-3-3 protein0Direct
Proteasome subunits0.0000000000049Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000000001588Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.000003847Direct
RecA protein-like (ATPase-domain)0.00002803Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00003044Direct
Anticodon-binding domain of Class II aaRS0.00006679Direct
Anticodon-binding domain0.00006679Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.000218Direct
L30e/L7ae ribosomal proteins0.0003008Direct
Smc hinge domain0.0003008Direct
Clathrin adaptor core protein0.001739Inherited
Elongation factors0.002665Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.005277Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.008059Inherited
Cold shock DNA-binding domain-like0.05049Inherited
Laminin-type module0.0696Inherited
Translational machinery components0.0696Inherited
HMG-box0.1856Inherited
DNA replication initiator (cdc21/cdc54) N-terminal domain0.2089Inherited
Tubulin, C-terminal domain0.2089Inherited
Tubulin, GTPase domain0.2089Inherited
Cyclin0.5187Inherited
Nucleosome core histones0.9769Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL-intermediate domain like0Direct
GroEL equatorial domain-like0Direct
14-3-3 protein0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL apical domain-like0.000000000001965Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000008271Direct
Sm-like ribonucleoproteins0.0000008868Direct
RBP11-like subunits of RNA polymerase0.00003517Direct
Class II aaRS ABD-related0.00009876Direct
S15/NS1 RNA-binding domain0.0001598Direct
L30e-like0.0002055Direct
Translational machinery components0.0004392Direct
Smc hinge domain0.0004392Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0006505Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.002907Inherited
Class II aaRS and biotin synthetases0.006548Inherited
Translation proteins0.01191Inherited
Nucleic acid-binding proteins0.01375Inherited
Translation proteins SH3-like domain0.08286Inherited
Cysteine-rich domain0.133Inherited
P-loop containing nucleoside triphosphate hydrolases0.1529Inherited
HMG-box0.1854Inherited
Tubulin C-terminal domain-like0.2094Inherited
Tubulin nucleotide-binding domain-like0.2094Inherited
Ribosomal proteins S24e, L23 and L15e0.3204Inherited
"Winged helix" DNA-binding domain0.4766Inherited
Histone-fold0.9964Inherited
Protein kinase-like (PK-like)0.9993Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.00003517Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0001598Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0007921Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.0009419Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.002907Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.2094Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.002907Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)