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Worm Phenotype (WP): chromosome condensation variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + + + 5:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   gametogenesis variant [WBPhenotype:0000774] <2>(57|57) (58|22|4)
+ + + 3:   germ cell development variant [WBPhenotype:0000812] <7>(54|57) (55|22|4)
+ + + 3:   cell cycle variant [WBPhenotype:0000740] <6>(35|35) (35|17|4)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ + 2:   cell division variant [WBPhenotype:0000746] <19>(51|54) (52|20|4)
+ + 2:   meiosis variant [WBPhenotype:0000775] <10>(34|32) (34|14|4)
+ 1:   mitosis variant [WBPhenotype:0001743] <8>(10|12) (10|4|1)
+ 1:   meiotic chromosome organization variant [WBPhenotype:0002012] <11>(16|14) (16|4|1)
0:   chromosome condensation variant [WBPhenotype:0001361] <1>(7|8) (7|3|1)
- 1:   chromosome condensation failure [WBPhenotype:0001362](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0000000653Direct
Histone-fold0.0000009198Direct
F1F0 ATP synthase subunit C0.000001527Direct
GroEL-intermediate domain like0.00003376Direct
GroEL equatorial domain-like0.00003376Direct
GroEL apical domain-like0.00005472Direct
SNARE-like0.0002341Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Proteasome subunits0.0000000003396Direct
Nucleosome core histones0.000002124Direct
F1F0 ATP synthase subunit C0.00000268Direct
RecA protein-like (ATPase-domain)0.000007744Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00003381Direct
Group II chaperonin (CCT, TRIC), apical domain0.00005899Direct
Nitrogenase iron protein-like0.0001454Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0002971Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000005228Direct
Histone-fold0.0000007431Direct
F1F0 ATP synthase subunit C0.000001236Direct
GroEL equatorial domain-like0.00002756Direct
GroEL-intermediate domain like0.00002756Direct
GroEL apical domain-like0.00004479Direct
SNARE-like0.0001926Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0000002565Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00002756Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00002756Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00002756Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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