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Worm Phenotype (WP): chromosome condensation variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ + + + + + 6:   organism development variant [WBPhenotype:0000531] <10>(504|576) (504|246|68)
+ + + + + 5:   cell development variant [WBPhenotype:0000529] <17>(128|124) (129|49|15)
+ + + + + 5:   lethal [WBPhenotype:0000062] <5>(498|574) (498|245|68)
+ + + + + 5:   embryonic development variant [WBPhenotype:0000749] <21>(445|531) (445|231|63)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + 4:   embryonic lethal [WBPhenotype:0000050] <7>(443|531) (443|230|63)
+ + + + 4:   gametogenesis variant [WBPhenotype:0000774] <2>(65|59) (66|27|6)
+ + + 3:   germ cell development variant [WBPhenotype:0000812] <8>(63|59) (64|27|6)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ + + 3:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ + + 3:   early embryonic lethal [WBPhenotype:0001100] <30>(61|63) (61|26|4)
+ + 2:   meiosis variant [WBPhenotype:0000775] <11>(38|34) (38|16|4)
+ + 2:   meiosis defective early emb [WBPhenotype:0001041] <11>(38|34) (38|16|4)
+ + 2:   cell division variant [WBPhenotype:0000746] <20>(55|57) (55|24|4)
+ 1:   meiotic chromosome organization variant [WBPhenotype:0002012] <11>(16|14) (16|4|1)
+ 1:   mitosis variant [WBPhenotype:0001743] <6>(10|12) (10|4|1)
0:   chromosome condensation variant [WBPhenotype:0001361] <1>(7|8) (7|3|1)
- 1:   chromosome condensation failure [WBPhenotype:0001362](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000006807Direct
Histone-fold0.000001348Direct
F1F0 ATP synthase subunit C0.000001557Direct
GroEL equatorial domain-like0.00003449Direct
GroEL-intermediate domain like0.00003449Direct
GroEL apical domain-like0.00005585Direct
SNARE-like0.0002391Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Proteasome subunits0.0000000003611Direct
F1F0 ATP synthase subunit C0.00000277Direct
Nucleosome core histones0.000003171Direct
RecA protein-like (ATPase-domain)0.00000801Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00003498Direct
Group II chaperonin (CCT, TRIC), apical domain0.00006098Direct
Nitrogenase iron protein-like0.0001503Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0003072Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000005491Direct
Histone-fold0.000001099Direct
F1F0 ATP synthase subunit C0.00000127Direct
GroEL-intermediate domain like0.00002837Direct
GroEL equatorial domain-like0.00002837Direct
GroEL apical domain-like0.00004603Direct
SNARE-like0.0001979Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0000002632Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00002837Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00002837Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00002837Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)