SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): protein modification variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + + 4:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(178|190) (182|87|26)
+ + 2:   metabolic pathway variant [WBPhenotype:0000463] <8>(39|32) (39|15|9)
+ + 2:   cell homeostasis metabolism variant [WBPhenotype:0000585] <12>(60|54) (60|23|12)
+ + 2:   gene expression variant [WBPhenotype:0000717] <11>(127|139) (131|64|20)
+ 1:   protein metabolism variant [WBPhenotype:0001644] <9>(30|26) (30|15|8)
+ 1:   protein expression variant [WBPhenotype:0000112] <6>(39|44) (41|19|6)
0:   protein modification variant [WBPhenotype:0001382] <9>(13|10) (13|3|0)
- 1:   protein acetylation variant [WBPhenotype:0001917] <2>(2|2) (2|0|0)
- 1:   protein phosphorylation variant [WBPhenotype:0001349] <2>(6|5) (6|3|0)
- 1:   protein carbonylation variant [WBPhenotype:0002272] <1>(1|1) (1|0|0)
- 1:   protein methylation variant [WBPhenotype:0001383] <1>(3|2) (3|0|0)
- 1:   protein ubiquitination variant [WBPhenotype:0001865] <1>(0|0) (0|0|0)
- 1:   chromatin modification variant [WBPhenotype:0002420](0|0) (0|0|0)
- 1:   protein glycosylation variant [WBPhenotype:0002429](0|0) (0|0|0)
- 1:   protein neddylation variant [WBPhenotype:0001874](0|0) (0|0|0)
- 1:   protein sumoylation variant [WBPhenotype:0002362](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Arginase/deacetylase0Direct
Heme-dependent catalase-like0Direct
SET domain0.000000001801Direct
FYVE/PHD zinc finger0.00004272Direct
Protein kinase-like (PK-like)0.0006551Direct
Chromo domain-like0.0008008Direct
DHS-like NAD/FAD-binding domain0.00145Inherited
Clavaminate synthase-like0.001863Inherited
Transducin (alpha subunit), insertion domain0.006878Inherited
Translation proteins0.01663Inherited
Cyclin-like0.05293Inherited
SH3-domain0.4289Inherited
PH domain-like0.5733Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Sir2 family of transcriptional regulators0Direct
Heme-dependent catalases0Direct
Histone deacetylase, HDAC0Direct
Histone lysine methyltransferases0.0000002326Direct
Protein kinases, catalytic subunit0.0001029Direct
PHD domain0.0002732Direct
Transducin (alpha subunit), insertion domain0.006275Inherited
Elongation factors0.006275Inherited
G proteins0.3264Inherited
Pleckstrin-homology domain (PH domain)0.4565Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
Arginase/deacetylase0Direct
SET domain0.000000001432Direct
FYVE/PHD zinc finger0.00003491Direct
Protein kinase-like (PK-like)0.0005431Direct
Chromo domain-like0.000666Direct
DHS-like NAD/FAD-binding domain0.001211Inherited
Clavaminate synthase-like0.001561Inherited
Transducin (alpha subunit), insertion domain0.005869Inherited
Translation proteins0.01444Inherited
Cyclin-like0.04698Inherited
SH3-domain0.4082Inherited
PH domain-like0.5513Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.005869Inherited
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.005869Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.01444Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)