SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): level of protein expression variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <4>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <10>(355|415) (355|191|56)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(346|406) (348|189|55)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(171|182) (175|80|24)
+ + 2:   gene expression variant [WBPhenotype:0000717] <10>(122|134) (127|61|19)
+ 1:   protein expression variant [WBPhenotype:0000112] <6>(38|44) (39|19|6)
0:   level of protein expression variant [WBPhenotype:0001400] <2>(11|12) (11|9|4)
- 1:   protein expression reduced [WBPhenotype:0000120] <5>(7|9) (7|8|3)
- 1:   protein expression increased [WBPhenotype:0000119](2|2) (2|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
Integrin domains0.000005281Direct
Second domain of FERM0.00005445Direct
Spectrin repeat0.00006719Direct
SH2 domain0.0003454Direct
PH domain-like0.0007103Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001175Inherited
SH3-domain0.008775Inherited
Actin-like ATPase domain0.06705Inherited
PX domain0.3244Inherited
"Winged helix" DNA-binding domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
Heme-dependent catalases0Direct
LIM domain0.000003431Direct
Third domain of FERM0.00008384Direct
Spectrin repeat0.00008384Direct
Second domain of FERM0.00009649Direct
First domain of FERM0.0001252Direct
SH2 domain0.0003745Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00139Inherited
SH3-domain0.009637Inherited
Actin/HSP700.06665Inherited
Extended AAA-ATPase domain0.2102Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Heme-dependent catalase-like0Direct
Integrin domains0.00000432Direct
Second domain of FERM0.00004487Direct
Spectrin repeat0.00005537Direct
SH2 domain0.0002865Direct
PH domain-like0.0005935Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0009846Direct
SH3-domain0.007541Inherited
Actin-like ATPase domain0.05992Inherited
PX domain0.3047Inherited
"Winged helix" DNA-binding domain1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.00000432Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.00000734Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0001274Direct
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.0001411Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.005027Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.01735Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.05599Inherited
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.05599Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.05992Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.000000006899Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.00005754Direct
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.00009083Direct
    57424,57424,57424
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0.0009846Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)