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Worm Phenotype (WP): pattern protein expression variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <4>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <10>(355|415) (355|191|56)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(346|406) (348|189|55)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(171|182) (175|80|24)
+ + 2:   gene expression variant [WBPhenotype:0000717] <10>(122|134) (127|61|19)
+ 1:   protein expression variant [WBPhenotype:0000112] <6>(38|44) (39|19|6)
0:   pattern protein expression variant [WBPhenotype:0001408] <2>(12|19) (12|6|2)
- 1:   protein expression ectopic [WBPhenotype:0001409](0|1) (0|0|0)
- 1:   protein subcellular localization variant [WBPhenotype:0000436](10|18) (10|6|2)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Cullin homology domain0.0000000002548Direct
Cullin repeat-like0.000000008423Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.000001103Direct
Riboflavin synthase domain-like0.0002885Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.0002885Direct
Sm-like ribonucleoproteins0.002586Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.005628Inherited
PX domain0.01289Inherited
Protein kinase-like (PK-like)0.04378Inherited
Activating enzymes of the ubiquitin-like proteins0.0622Inherited
Cysteine-rich domain0.1364Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Phoshoinositide 3-kinase (PI3K), catalytic domain0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Cullin repeat0Direct
SCF ubiquitin ligase complex WHB domain0Direct
14-3-3 protein0Direct
Cullin homology domain0.0000000007583Direct
Armadillo repeat0.000000473Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000009751Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0000022Direct
Synaptotagmin-like (S variant)0.00008334Direct
Clathrin coat assembly domain0.0002485Direct
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.0107Inherited
PX domain0.01071Inherited
Pleckstrin-homology domain (PH domain)0.04997Inherited
Pumilio repeat0.05394Inherited
PLC-like (P variant)0.1035Inherited
Mammalian PLC0.1609Inherited
G proteins0.2161Inherited
Protein kinases, catalytic subunit0.3065Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
Cullin homology domain0.0000000002034Direct
Cullin repeat-like0.000000006763Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0.0000008981Direct
Riboflavin synthase domain-like0.0002391Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.0002391Direct
Sm-like ribonucleoproteins0.002187Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.004799Inherited
PX domain0.01114Inherited
Protein kinase-like (PK-like)0.03873Inherited
Activating enzymes of the ubiquitin-like proteins0.05544Inherited
Cysteine-rich domain0.1244Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    74788,75632
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 0Direct
    48371,56112
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0.0000001577Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0.000004272Direct
    57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.05544Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    74788,75632,46785
  • 74788 - Cullin repeat-like
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)