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Worm Phenotype (WP): endocytic transport variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   physiology variant [WBPhenotype:0000519] <7>(489|563) (489|241|65)
+ 1:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|67|17)
+ 1:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|67|17)
0:   endocytic transport variant [WBPhenotype:0001421] <2>(28|26) (29|11|2)
- 1:   endocytic transport defect [WBPhenotype:0001422] <7>(27|25) (28|11|2)
- 1:   endosome to lysosome trafficking defective [WBPhenotype:0001754](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Nicotinic receptor ligand binding domain-like0Direct
Neurotransmitter-gated ion-channel transmembrane pore0Direct
Sec7 domain0Direct
t-snare proteins0.000000000524Direct
Class II aaRS ABD-related0.0000005655Direct
Sec1/munc18-like (SM) proteins0.0000009391Direct
F1F0 ATP synthase subunit C0.00001112Direct
BEACH domain0.000129Direct
Myosin rod fragments0.0009031Direct
GroEL apical domain-like0.001796Inherited
Class II aaRS and biotin synthetases0.002432Inherited
GroEL equatorial domain-like0.004743Inherited
GroEL-intermediate domain like0.004743Inherited
Sm-like ribonucleoproteins0.005925Inherited
ValRS/IleRS/LeuRS editing domain0.007855Inherited
Actin-like ATPase domain0.01891Inherited
DNA ligase/mRNA capping enzyme, catalytic domain0.02247Inherited
CAD & PB1 domains0.02247Inherited
PH domain-like0.02619Inherited
FYVE/PHD zinc finger0.03519Inherited
HSP20-like chaperones0.06541Inherited
Lipovitellin-phosvitin complex, superhelical domain0.1503Inherited
Lipovitellin-phosvitin complex; beta-sheet shell regions0.1503Inherited
Translation proteins0.1711Inherited
Nucleic acid-binding proteins0.2038Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.2044Inherited
ENTH/VHS domain0.2867Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
14-3-3 protein0Direct
Neurotransmitter-gated ion-channel transmembrane pore0Direct
Sec7 domain0Direct
Nicotinic receptor ligand binding domain-like0Direct
t-snare proteins0.000000002054Direct
Sec1/munc18-like (SM) proteins0.000002116Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain0.00001008Direct
F1F0 ATP synthase subunit C0.00002086Direct
BEACH domain0.0002024Direct
Anticodon-binding domain of Class II aaRS0.0002024Direct
Group II chaperonin (CCT, TRIC), apical domain0.0002688Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0007988Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0007988Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.00221Inherited
Actin/HSP700.005798Inherited
ValRS/IleRS/LeuRS editing domain0.006924Inherited
Myotubularin-like phosphatases0.006924Inherited
Linker histone H1/H50.02006Inherited
Pumilio repeat0.02991Inherited
Armadillo repeat0.1068Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.1231Inherited
Lipovitellin-phosvitin complex, superhelical domain0.141Inherited
Lipovitellin-phosvitin complex; beta-sheet shell regions0.141Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.2328Inherited
Pleckstrin-homology domain (PH domain)0.4778Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Neurotransmitter-gated ion-channel transmembrane pore0Direct
14-3-3 protein0Direct
Sec7 domain0Direct
Nicotinic receptor ligand binding domain-like0Direct
t-snare proteins0.0000000004184Direct
Class II aaRS ABD-related0.0000004588Direct
Sec1/munc18-like (SM) proteins0.0000007638Direct
F1F0 ATP synthase subunit C0.000009101Direct
BEACH domain0.0001065Direct
Myosin rod fragments0.0007562Direct
GroEL apical domain-like0.001512Inherited
Class II aaRS and biotin synthetases0.002055Inherited
GroEL equatorial domain-like0.004035Inherited
GroEL-intermediate domain like0.004035Inherited
Sm-like ribonucleoproteins0.005057Inherited
ValRS/IleRS/LeuRS editing domain0.006735Inherited
Actin-like ATPase domain0.01643Inherited
CAD & PB1 domains0.0196Inherited
DNA ligase/mRNA capping enzyme, catalytic domain0.0196Inherited
PH domain-like0.02291Inherited
FYVE/PHD zinc finger0.031Inherited
HSP20-like chaperones0.05839Inherited
Zinc beta-ribbon0.06603Inherited
Lipovitellin-phosvitin complex; beta-sheet shell regions0.1374Inherited
Lipovitellin-phosvitin complex, superhelical domain0.1374Inherited
Translation proteins0.157Inherited
Nucleic acid-binding proteins0.1879Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.1884Inherited
ENTH/VHS domain0.2678Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48425,50729
  • 48425 - Sec7 domain
  • 50729 - PH domain-like
  • 0Direct
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.0001065Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0001065Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.004035Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.004035Inherited
    50677,52374
  • 50677 - ValRS/IleRS/LeuRS editing domain
  • 52374 - Nucleotidylyl transferase
  • 0.006735Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.00961Inherited
    56968,48431
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 0.1374Inherited
    48431,56968
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0.1374Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.1868Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.004035Inherited
    56968,48431,56968
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0.1374Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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